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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG016030
Reference: TK1151 Chr: ChrUn Coordinates: 4295061-4296967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1668 bp · TkAUNG016030|TK1151|cDNA

ATGGCGTATTCTACCACAGAGCCGCCGCCGGCGTATGCTCTGTCACTCACGGACGACAAGCAGCGGCGACGCCTCGAGGAAGACGAGAATCCTTTCGAAGGGAAGTACTCTTGGTTAACGGTAGCTCTTTGCCCATGTCTCGTATGTTTTATACTTGTGATGATAATAGTCTCGATCGTACTCACCGTCAAGTTCCATATATTTTGCCACACTTCACTTGGATCTCTCCTGGTAAACCACGTGCATTCCTTCTTATTCCC...

CDS

Download CDS FASTA

1668 bp · TkAUNG016030|TK1151|CDS

ATGGCGTATTCTACCACAGAGCCGCCGCCGGCGTATGCTCTGTCACTCACGGACGACAAGCAGCGGCGACGCCTCGAGGAAGACGAGAATCCTTTCGAAGGGAAGTACTCTTGGTTAACGGTAGCTCTTTGCCCATGTCTCGTATGTTTTATACTTGTGATGATAATAGTCTCGATCGTACTCACCGTCAAGTTCCATATATTTTGCCACACTTCACTTGGATCTCTCCTGGTAAACCACGTGCATTCCTTCTTATTCCC...

Protein

Download Protein FASTA

555 aa · TkAUNG016030|TK1151|PROTEIN

MAYSTTEPPPAYALSLTDDKQRRRLEEDENPFEGKYSWLTVALCPCLVCFILVMIIVSIVLTVKFHIFCHTSLGSLLVNHVHSFLFPPSSLFTYIDLSEKKLHHQIRGFCGVVNSDEESETEDAEGVKSVADEEEVKRICNVIEELFALDRNMEAVLDDCKINLTHDLVIDVLERFKHARKPAFRFFSWAGQQPGFHHDSRTYNTIMSILGKTKQFETMISLLDEMGDKRSKLGKEAQLLFHNLKGKFTPNIQTYTVLLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG016030
TK1151 IDTkAUNG016030
OH-1004 IDLXL04_005553
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)28.300
Protein coverage (%)TK1151 35.315 / OH-1004 42.157
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG016030
LocationChrUn:4295061-4296967 (-)
DescriptionSimilar to At1g73400: Pentatricopeptide repeat-containing protein At1g73400, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14820 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial. No verified direct reference in this release
At3g62540 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial. No verified direct reference in this release
At3g62470 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release
At3g15200 Putative pentatricopeptide repeat-containing protein At3g15200. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005553 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G73400
ath:AT1G77360
ath:AT3G62470
ath:AT3G62540
ath:AT5G14820
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.711
Rank 1 · TkAUNG016030 · TK1151
Plastid0.203
Rank 2 · TkAUNG016030 · TK1151
Nucleus0.074
Rank 3 · TkAUNG016030 · TK1151
Cytoplasm0.036
Rank 4 · TkAUNG016030 · TK1151
Cell membrane0.015
Rank 5 · TkAUNG016030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13762MNE1134-208 aa
PF23276TPR_24183-231 aa
PF29070MSC6_N194-224 aa
PF12854PPR_1197-226 aa
PF13812PPR_3198-226 aa
PF13041PPR_2199-229 aa
PF01535PPR202-229 aa
PF06239ECSIT_N213-258 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG016030PF13762MNE11342080.1213.1
TkAUNG016030PF23276TPR_241832313.1e-0937.5
TkAUNG016030PF29070MSC6_N1942241.2e-2281.3
TkAUNG016030PF12854PPR_11972262.2e-31108.0
TkAUNG016030PF13812PPR_31982263.7e-2691.7
TkAUNG016030PF13041PPR_21992294.7e-56187.4
TkAUNG016030PF01535PPR2022291.6e-40135.2
TkAUNG016030PF06239ECSIT_N2132585.9e-0523.1
TkAUNG016030PF29978ATP18_TPR2142360.001419.2
TkAUNG016030PF17177PPR_long2422861.1e-1455.0
TkAUNG016030PF13812PPR_32482943.7e-2691.7
TkAUNG016030PF12854PPR_12492782.2e-31108.0
TkAUNG016030PF13041PPR_22502994.7e-56187.4
TkAUNG016030PF29070MSC6_N2523461.2e-2281.3
TkAUNG016030PF01535PPR2542831.6e-40135.2
TkAUNG016030PF29978ATP18_TPR2693040.001419.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LEQ7Arabidopsis thalianasp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial52.700%Swiss-ProtLow
Q3EAF8Arabidopsis thalianasp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial52.200%Swiss-ProtLow
Q9LZP3Arabidopsis thalianasp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial52.200%Swiss-ProtLow
Q9LUJ4Arabidopsis thalianasp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial25.600%Swiss-ProtLow
Q9LIL5Arabidopsis thalianasp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g1520024.600%Swiss-ProtLow

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