RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG010780
Reference: TK1151 Chr: ChrUn Coordinates: 2610154-2611038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

885 bp · TkAUNG010780|TK1151|cDNA

ATGGCGTTGGTGGTTATCTGTGGTCAACCTTGTAGTGGGAAATCCACAGCTGCAGCCTGCCTGGCTGAAGCCCTTCAAGAAACAGAATCTAAGCCATCTGTTCGGATCATTAATGAATCTTCCTTTCACCTGAATCGTAACCAAAGCTATGCTGACATGCCATCTGAAAAGAATCTAAGGGGGGTCCTGAGATCTGAAGTTGATAGATCATTGTCCAGAGATAATATCATCATAGTGGATTCTTTAAACAGCATAAAGGG...

CDS

Download CDS FASTA

885 bp · TkAUNG010780|TK1151|CDS

ATGGCGTTGGTGGTTATCTGTGGTCAACCTTGTAGTGGGAAATCCACAGCTGCAGCCTGCCTGGCTGAAGCCCTTCAAGAAACAGAATCTAAGCCATCTGTTCGGATCATTAATGAATCTTCCTTTCACCTGAATCGTAACCAAAGCTATGCTGACATGCCATCTGAAAAGAATCTAAGGGGGGTCCTGAGATCTGAAGTTGATAGATCATTGTCCAGAGATAATATCATCATAGTGGATTCTTTAAACAGCATAAAGGG...

Protein

Download Protein FASTA

294 aa · TkAUNG010780|TK1151|PROTEIN

MALVVICGQPCSGKSTAAACLAEALQETESKPSVRIINESSFHLNRNQSYADMPSEKNLRGVLRSEVDRSLSRDNIIIVDSLNSIKGYRYELWCLARAAGTRYCVLHCDLEETYCRKWNEERREKLEASYDDNIFEDLVRRFERPDSKNRWDSPLFELWPSKDGIVKSSAAIVDAVTYLTKRVDSKTKDVKVLQPTIATQNARLTEANSLYELDRATLEVTNMIVEAQSRALGGPLNGVSLGPGLPSIEISRPVGLPELR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG010780
TK1151 IDTkAUNG010780
OH-1004 IDLXL04_036121
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)71.100
Protein coverage (%)TK1151 91.497 / OH-1004 54.990
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG010780
LocationChrUn:2610154-2611038 (+)
DescriptionSimilar to KTI12: Protein KTI12 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13870 Elongator complex-associated factor that is not a structural subunit but rather transiently contacts the complex.
DRL1, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants.2003 · DOI: 10.1105/tpc.007062
Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana.2010 · DOI: 10.1186/1471-2229-10-201
Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12.2015 · DOI: 10.14348/molcells.2015.2297

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BK80 Elongator complex-associated factor that is not a structural subunit but rather transiently contacts the complex (By similarity). No verified direct reference in this release
Os11g0312782 Elongator complex-associated factor that is not a structural subunit but rather transiently contacts the complex. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036121 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002098 tRNA wobble uridine modification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006400 tRNA modification Biological Process
GO:0009933 meristem structural organization Biological Process
GO:0010449 root meristem growth Biological Process
GO:0048366 leaf development Biological Process
GO:0080178 5-carbamoylmethyl uridine residue modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0033588 elongator holoenzyme complex Cellular Component
GO:0005516 calmodulin binding Molecular Function
KEGG gene cross-reference
ath:AT1G13870
dosa:Os11g0312782
dre:751662
xla:735147
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.522
Rank 1 · TkAUNG010780 · TK1151
Cytoplasm0.505
Rank 2 · TkAUNG010780 · TK1151
Mitochondrion0.090
Rank 3 · TkAUNG010780 · TK1151
Peroxisome0.049
Rank 4 · TkAUNG010780 · TK1151
Plastid0.031
Rank 5 · TkAUNG010780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08433KTI121-271 aa
PF13671AAA_333-145 aa
PF01583APS_kinase3-115 aa
PF13401AAA_223-64 aa
PF20720nSTAND33-32 aa
PF24883NPHP3_N3-33 aa
PF06414Zeta_toxin3-36 aa
PF13191AAA_163-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG010780PF08433KTI1212716.9e-77259.3
TkAUNG010780PF13671AAA_3331456.9e-1349.8
TkAUNG010780PF01583APS_kinase31150.002618.5
TkAUNG010780PF13401AAA_223640.004518.0
TkAUNG010780PF20720nSTAND33320.01116.2
TkAUNG010780PF24883NPHP3_N3330.02615.4
TkAUNG010780PF06414Zeta_toxin3360.02614.7
TkAUNG010780PF13191AAA_163700.113.8
TkAUNG010780PF13238AAA_1841166.7e-0524.1
TkAUNG010780PF13521AAA_2841410.000321.8
TkAUNG010780PF01926MMR_HSR14550.1612.8
TkAUNG010780PF00910RNA_helicase4380.2112.8
TkAUNG010780PF00004AAA5880.07814.2
TkAUNG010780PF19975DO-GTPase15390.1911.7
TkAUNG010780PF22124Glyco_hydro_95_cat25710.1112.1
TkAUNG010780PF22124Glyco_hydro_95_cat1402190.1112.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMH0Arabidopsis thalianasp|Q9LMH0|KTI12_ARATH Protein KTI12 homolog71.200%Swiss-ProtHigh
B8BK80Oryza sativa subsp. indicasp|B8BK80|KTI12_ORYSI Protein KTI12 homolog73.400%Swiss-ProtHigh
B9GAG9Oryza sativa subsp. japonicasp|B9GAG9|KTI12_ORYSJ Protein KTI12 homolog73.400%Swiss-ProtHigh

JBrowse

View in Genome Browser