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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG005830
Reference: TK1151 Chr: ChrUn Coordinates: 1643673-1655198 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4200 bp · TkAUNG005830|TK1151|cDNA

ATGCAGGGGCATCCCGTATTGCTGAATAGAGCACCGACTCTGCATAAATTGGGCATACAGGCATTCCAGCCCATTTTAGTGGAGGGGCGCGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAACGCGGATTTTGATGGGGATCAAATGGCTGTTCATGTACCCTTATCTTTGGAAGCTCAAGCGGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGAGATCCCATTTCCGTACC...

CDS

Download CDS FASTA

4200 bp · TkAUNG005830|TK1151|CDS

ATGCAGGGGCATCCCGTATTGCTGAATAGAGCACCGACTCTGCATAAATTGGGCATACAGGCATTCCAGCCCATTTTAGTGGAGGGGCGCGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAACGCGGATTTTGATGGGGATCAAATGGCTGTTCATGTACCCTTATCTTTGGAAGCTCAAGCGGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGAGATCCCATTTCCGTACC...

Protein

Download Protein FASTA

1399 aa · TkAUNG005830|TK1151|PROTEIN

MQGHPVLLNRAPTLHKLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLWLVQDAEKQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPLNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPRNGM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG005830
TK1151 IDTkAUNG005830
OH-1004 IDLXL04_007647
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)29.700
Protein coverage (%)TK1151 20.372 / OH-1004 61.554
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG005830
LocationChrUn:1643673-1655198 (-)
DescriptionSimilar to V-type proton ATPase subunit B 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007647 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007035 vacuolar acidification Biological Process
GO:0030835 negative regulation of actin filament depolymerization Biological Process
GO:0046034 ATP metabolic process Biological Process
GO:0051017 actin filament bundle assembly Biological Process
GO:0051693 actin filament capping Biological Process
GO:1902600 proton transmembrane transport Biological Process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G20260
ath:AT4G38510
ghi:107890851
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.747
Rank 1 · TkAUNG005830 · TK1151
Mitochondrion0.143
Rank 2 · TkAUNG005830 · TK1151
Cytoplasm0.086
Rank 3 · TkAUNG005830 · TK1151
Endoplasmic reticulum0.037
Rank 4 · TkAUNG005830 · TK1151
Nucleus0.035
Rank 5 · TkAUNG005830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00623RNA_pol_Rpb1_22-69 aa
PF04983RNA_pol_Rpb1_374-99 aa
PF05000RNA_pol_Rpb1_4119-183 aa
PF04998RNA_pol_Rpb1_5198-391 aa
PF00318Ribosomal_S2412-612 aa
PF00119ATP-synt_A612-793 aa
PF00137ATP-synt_C805-841 aa
PF00430ATP-synt_B842-928 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG005830PF00623RNA_pol_Rpb1_22691.4e-2487.9
TkAUNG005830PF04983RNA_pol_Rpb1_374990.009216.6
TkAUNG005830PF05000RNA_pol_Rpb1_41191833e-1350.3
TkAUNG005830PF04998RNA_pol_Rpb1_51983918.9e-40137.5
TkAUNG005830PF00318Ribosomal_S24126121.8e-70237.3
TkAUNG005830PF00119ATP-synt_A6127935e-43148.2
TkAUNG005830PF00137ATP-synt_C8058412.8e-0834.6
TkAUNG005830PF00430ATP-synt_B8429281.5e-1248.4
TkAUNG005830PF00306ATP-synt_ab_C8458726e-44150.1
TkAUNG005830PF24423OVT18539119.77.4
TkAUNG005830PF02874ATP-synt_ab_N9279854.9e-1453.3
TkAUNG005830PF09378HAS-barrel9289630.008117.0
TkAUNG005830PF00006ATP-synt_ab98310082.4e-82276.4
TkAUNG005830PF00006ATP-synt_ab104212572.4e-82276.4
TkAUNG005830PF00306ATP-synt_ab_C126413886e-44150.1
TkAUNG005830PF24423OVT1128913159.77.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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