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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G411750
Reference: TK1151 Chr: Chr08 Coordinates: 104808105-104816148 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2884 bp · TkA08G411750|TK1151|cDNA

ATAAAATATGAAGTGACTACTTACCCAACGGTCTAACAGTTGCACTACAAAAACAATATGTTCATATTTTTAGCAGAAATGCACTCCATTCTAGTATCCTACTCAAAAAACATTCCAAAAAAGTGAAATATGTCCCCTTAAAACAGAGTAGGCAATGCTTCCCTTTTGCCGATGAGCACAGTGTCTTATTGAAGTTTTAGGGTTCGAAATGCCGCTTACTTTCAGAAACTAACACTCTCTTCGACGCATTTCCTGCTCAT...

CDS

Download CDS FASTA

2121 bp · TkA08G411750|TK1151|CDS

ATGAAGATTTATATTGTTGCTATTTTGGGTTTATTGGCAATTTCTCTCAGACCAACTTGTTTTGGGTATACCGATCCACGTGACATTTTAGCCATAAATAGTCTATTTGCCGCCCTTGGCTTCCCTCCTCTTCTCGGATGGTTGCTTGCAGGAGGAGACCCGTGTTTAGAAGGTTGGCAAGGTGTCCAATGCATGGATTCCAAAATAACAGGAATAGTCCTTAATGATGCTAATTTGGGCGGTGAACTCGGTGAGAATTT...

Protein

Download Protein FASTA

706 aa · TkA08G411750|TK1151|PROTEIN

MKIYIVAILGLLAISLRPTCFGYTDPRDILAINSLFAALGFPPLLGWLLAGGDPCLEGWQGVQCMDSKITGIVLNDANLGGELGENLGVFGSIIQIDLSNNHIGGTIPSDLPPTVKTFFLSGNQLKGSIPDSLSILGQLTDLSLNNNHLSGVIPDSFQQLTALVNLDLSANNLSGSLPPSMVNLSSISTLHLQENYLTGVLDVLQDLPLIDLDIEDNIFSGPIPPKLLGIPNFRSKGNPFNTTIIHSPPVLSPSPSSPFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G411750
TK1151 IDTkA08G411750
OH-1004 IDLXL04_027200
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)62.000
Protein coverage (%)TK1151 96.176 / OH-1004 95.839
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G411750
LocationChr08:104808105-104816148 (-)
DescriptionSimilar to SRF1: Protein STRUBBELIG-RECEPTOR FAMILY 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g20850 Not essential for epidermal patterning and not redundant with STRUBBELIG.
The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis.2007 · DOI: 10.1016/j.ydbio.2006.09.009
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.2007 · DOI: 10.1186/1471-2229-7-16
At4g03390 Not essential for epidermal patterning and not redundant with STRUBBELIG.
The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis.2007 · DOI: 10.1016/j.ydbio.2006.09.009
At1g53730 Protein STRUBBELIG-RECEPTOR FAMILY 6. No verified direct reference in this release
At4g22130 Protein STRUBBELIG-RECEPTOR FAMILY 8. No verified direct reference in this release
At3g14350 Protein STRUBBELIG-RECEPTOR FAMILY 7. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027200 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000902 cell morphogenesis Biological Process
GO:0007165 signal transduction Biological Process
GO:0007623 circadian rhythm Biological Process
GO:0010059 positive regulation of atrichoblast fate specification Biological Process
GO:0010063 positive regulation of trichoblast fate specification Biological Process
GO:0010071 root meristem specification Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010497 plasmodesmata-mediated intercellular transport Biological Process
GO:0042127 regulation of cell population proliferation Biological Process
GO:0048366 leaf development Biological Process
GO:0048367 shoot system development Biological Process
GO:0048437 floral organ development Biological Process
KEGG gene cross-reference
ath:AT1G11130
ath:AT1G78980
ath:AT2G20850
ath:AT4G03390
ath:AT4G22130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.840
Rank 1 · TkA08G411750 · TK1151
Endoplasmic reticulum0.086
Rank 2 · TkA08G411750 · TK1151
Cytoplasm0.078
Rank 3 · TkA08G411750 · TK1151
Nucleus0.062
Rank 4 · TkA08G411750 · TK1151
Lysosome / Vacuole0.029
Rank 5 · TkA08G411750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01040UbiA7-54 aa
PF23211LRR_LRWD187-149 aa
PF00560LRR_194-111 aa
PF13855LRR_895-105 aa
PF12799LRR_495-108 aa
PF13855LRR_8113-173 aa
PF12799LRR_4113-150 aa
PF00560LRR_1116-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G411750PF01040UbiA7540.3910.7
TkA08G411750PF23211LRR_LRWD1871490.3111.4
TkA08G411750PF00560LRR_1941111.8e-1245.5
TkA08G411750PF13855LRR_8951054e-0936.8
TkA08G411750PF12799LRR_4951081.8e-0525.5
TkA08G411750PF13855LRR_81131734e-0936.8
TkA08G411750PF12799LRR_41131501.8e-0525.5
TkA08G411750PF00560LRR_11161341.8e-1245.5
TkA08G411750PF12799LRR_41381781.8e-0525.5
TkA08G411750PF00560LRR_11391601.8e-1245.5
TkA08G411750PF23211LRR_LRWD11392190.3111.4
TkA08G411750PF12799LRR_41621981.8e-0525.5
TkA08G411750PF00560LRR_11631841.8e-1245.5
TkA08G411750PF13855LRR_81822174e-0936.8
TkA08G411750PF00560LRR_11872011.8e-1245.5
TkA08G411750PF12799LRR_41882081.8e-0525.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q06BH3Arabidopsis thalianasp|Q06BH3|SRF1_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 149.000%Swiss-ProtMedium
Q6R2K3Arabidopsis thalianasp|Q6R2K3|SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 349.400%Swiss-ProtMedium
Q9C8M9Arabidopsis thalianasp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 643.200%Swiss-ProtMedium
Q6R2J8Arabidopsis thalianasp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 844.800%Swiss-ProtMedium
Q9LUL4Arabidopsis thalianasp|Q9LUL4|SRF7_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 735.000%Swiss-ProtMedium

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