TkA08G394890 | RubberDandelionOmics

Gene overview

TkA08G394890

Reference: TK1151 Chr: Chr08 Coordinates: 100712578-100716250 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2262 bp · TkA08G394890|TK1151|cDNA

ATAAAACCTAAGGAGGGGACCTAGAAATATTCTTCCTTACTCTCTTTCTCTCTCATCACCTCAAGACACACCAAATGAGAGACGAGCTGTAATCACATGGAGCTGTTTGTCTAATGGGGCCTCTCTCTCTTTCTCTCTCCCTCTTCATACCAATTATGAGCTAAGAATTTAAAAAAAGGAAAATATTTATTTACCATATCGATCGTCTGAACAGAGAAATGGCTGATGATAAGGTATCAACATCTTTCTGTACAATCCTT...

CDS

Download CDS FASTA

1116 bp · TkA08G394890|TK1151|CDS

ATGTCGGCACAAGTTGTTGCTGGAAATGGAGCTGAAACTGGTCACATCATCTCCACCACAATTGGAGGCAAGAATGGAGAACCAAAGCAGACTGTGAGTTACATGGCAGAGCGAGTGGTAGGTGCTGGATCATTTGGAATAGTTTTCCAGGCAAAATGTCTAGAAACAGGGGAAACAGTGGCGATAAAAAAGGTATTACAGGACAAAAGATACAAGAACCGTGAGTTACAGCTAATGAGAACAATGGACCATCCAAATGT...

Protein

Download Protein FASTA

371 aa · TkA08G394890|TK1151|PROTEIN

MSAQVVAGNGAETGHIISTTIGGKNGEPKQTVSYMAERVVGAGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQLMRTMDHPNVVSLKHCFYSTTTKDELFLNLVMEYVPETIFRVLKHHSDARQRMPLIYVKLYTYQIFRGLAYMHMVAGACHRDLKPQNVLVDPLTHEVKICDFGSAKMLVRGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCILAELLLGQPLFPGENAVDQLVEIIKVLGTPTREELR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G394890`
TK1151 ID	TkA08G394890
OH-1004 ID	LXL04_034427
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 98.933 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G394890

Location Chr08:100712578-100716250 (-)

Description Similar to ASK7: Shaggy-related protein kinase eta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18710`	Negative regulator in brassinosteroid signal transduction pathway important for plant growth.	Regulation of brassinosteroid signaling by a GSK3/SHAGGY-like kinase.2002 · DOI: 10.1126/science.1065769 The GSK3-like kinase BIN2 phosphorylates and destabilizes BZR1, a positive regulator of the brassinosteroid signaling pathway in Arabidopsis.2002 · DOI: 10.1073/pnas.152342599 Two putative BIN2 substrates are nuclear components of brassinosteroid signaling.2002 · DOI: 10.1104/pp.102.010918 Brassinosteroid regulates stomatal development by GSK3-mediated inhibition of a MAPK pathway.2012 · DOI: 10.1038/nature10794 SPEECHLESS integrates brassinosteroid and stomata signalling pathways.2012 · DOI: 10.1038/ncb2471 Brassinosteroid-regulated GSK3/Shaggy-like kinases phosphorylate mitogen-activated protein (MAP) kinase kinases, which control stomata development in Arabidopsis thaliana.2013 · DOI: 10.1074/jbc.m112.384453 BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis.2013 · DOI: 10.1111/tpj.12175 POLAR-guided signalling complex assembly and localization drive asymmetric cell division.2018 · DOI: 10.1038/s41586-018-0714-x
`At2g30980`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At1g06390`	Phosphorylates BSK1, BSK3, BSK5, BSK6, BSK8 and BSK11 in vitro.	BSKs are partially redundant positive regulators of brassinosteroid signaling in Arabidopsis.2013 · DOI: 10.1111/tpj.12175

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0205700`	Probable serine-threonine kinase that may act as a negative regulator of brassinosteroid (BR) signaling during flower development.	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses.2007 · DOI: 10.1007/s11103-007-9213-4
`Os05g0207500`	Serine-threonine kinase that acts as a negative regulator of brassinosteroid (BR) signaling.	DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.2012 · DOI: 10.1105/tpc.112.097394 OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.2016 · DOI: 10.1371/journal.pgen.1006118 OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.2019 · DOI: 10.1111/tpj.14332

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034427 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007033 vacuole organization Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009729 detection of brassinosteroid stimulus Biological Process

GO:0009733 response to auxin Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0010508 positive regulation of autophagy Biological Process

KEGG gene cross-reference

ath:AT1G06390

ath:AT2G30980

ath:AT4G18710

dosa:Os01g0205700

dosa:Os05g0207500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.607

Rank 1 · TkA08G394890 · TK1151

Nucleus0.540

Rank 2 · TkA08G394890 · TK1151

Cell membrane0.069

Rank 3 · TkA08G394890 · TK1151

Mitochondrion0.043

Rank 4 · TkA08G394890 · TK1151

Endoplasmic reticulum0.031

Rank 5 · TkA08G394890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109ABC127-66 aa

PF00069Pkinase35-318 aa

PF14531Kinase-like35-79 aa

PF07714PK_Tyr_Ser-Thr37-238 aa

PF01636APH95-125 aa

PF14531Kinase-like102-221 aa

PF03109ABC1107-185 aa

PF01636APH154-182 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G394890	`PF03109`	ABC1	27	66	2.9e-06	27.4
TkA08G394890	`PF00069`	Pkinase	35	318	3.8e-61	207.5
TkA08G394890	`PF14531`	Kinase-like	35	79	0.0022	18.0
TkA08G394890	`PF07714`	PK_Tyr_Ser-Thr	37	238	6.5e-26	91.9
TkA08G394890	`PF01636`	APH	95	125	0.029	14.8
TkA08G394890	`PF14531`	Kinase-like	102	221	0.0022	18.0
TkA08G394890	`PF03109`	ABC1	107	185	2.9e-06	27.4
TkA08G394890	`PF01636`	APH	154	182	0.029	14.8
TkA08G394890	`PF12330`	Haspin_kinase	157	212	0.13	12.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39011`	Arabidopsis thaliana	sp\|Q39011\|KSG7_ARATH Shaggy-related protein kinase eta	86.400%	Swiss-Prot	High
`Q39010`	Arabidopsis thaliana	sp\|Q39010\|KSG6_ARATH Shaggy-related protein kinase zeta	86.000%	Swiss-Prot	High
`Q39012`	Arabidopsis thaliana	sp\|Q39012\|KSG9_ARATH Shaggy-related protein kinase iota	84.800%	Swiss-Prot	High
`Q9LWN0`	Oryza sativa subsp. japonica	sp\|Q9LWN0\|GSK1_ORYSJ Shaggy-related protein kinase GSK1	85.100%	Swiss-Prot	High
`Q60EZ2`	Oryza sativa subsp. japonica	sp\|Q60EZ2\|GSK2_ORYSJ Shaggy-related protein kinase GSK2	85.700%	Swiss-Prot	High

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