TkA08G393160 | RubberDandelionOmics

Gene overview

TkA08G393160

Reference: TK1151 Chr: Chr08 Coordinates: 100238509-100242482 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1904 bp · TkA08G393160|TK1151|cDNA

AAAGTCTCAACATGTGGTGACTCTTAAGGACAGGTTGGATGTCATGTCGCAACGTTGTCGCTGGGAACATTATTTCATCCAGCGACAACGTTATTTCTCGGATGTTCAATGTATTTGGATTAATTATTTTGTGTATTTTAGGATACAGATTCAAATGTTGACTCTAATTTATTAATTCGTGTTTAAGAGTTAAAACTTAGTATAAATAATGTATTTGTTTTTTTTTAAATGTTTAACACCCCTAGACCGTTATCTATCCC...

CDS

Download CDS FASTA

1044 bp · TkA08G393160|TK1151|CDS

ATGGAGTCTTCAGAAGCTAAAAAAAGCGGTCTGCCAGCAGAGGCAATGAAGATACTGGAGTCATTGGCTTGTAGTTGGGATGATATAGTGGATGTAGATGGGTTGCAGGTAATAAGACTGAAGGGTGCTATGACGAATGAAGTGTACCAAATAAAGTGGGCAGCCAACAATAAGAAAGGAGAAGGGTCTCGAAAGGTTTTAGTTAGGATATATGGTGAGGGTGTGGATGTGTTTTTTGACCGTGAAATGGAGATCCAGAC...

Protein

Download Protein FASTA

347 aa · TkA08G393160|TK1151|PROTEIN

MESSEAKKSGLPAEAMKILESLACSWDDIVDVDGLQVIRLKGAMTNEVYQIKWAANNKKGEGSRKVLVRIYGEGVDVFFDREMEIQTFEFMSKQGQGPRLLGRFLNGRIEEFIHARTLSACDLRDPEVSALIASKLKEFHNLDMPGPKKPLVWDRLRNWLSAAKSMCSVEEAQALRLDAMGKEIESLHKCLTADEGVVSFCHNDLQYGNIMIDEDTRSITIIDYEYACYNPSMFDIANHFCEMAADYHTETPHLLQYAKY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G393160`
TK1151 ID	TkA08G393160
OH-1004 ID	LXL04_030035
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	57.500
Protein coverage (%)	TK1151 95.677 / OH-1004 90.608 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G393160

Location Chr08:100238509-100242482 (+)

Description Similar to CK1: Probable choline kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74320`	Involved in phospholipid biosynthesis.	No verified direct reference in this release
`At1g71697`	Involved in phospholipid biosynthesis.	No verified direct reference in this release
`At4g09760`	Involved in phospholipid biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030035 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006646 phosphatidylethanolamine biosynthetic process Biological Process

GO:0006656 phosphatidylcholine biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0016310 phosphorylation Biological Process

GO:0035264 multicellular organism growth Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004103 choline kinase activity Molecular Function

GO:0004305 ethanolamine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G71697

ath:AT1G74320

ath:AT2G26830

ath:AT4G09760

mmu:214253

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.707

Rank 1 · TkA08G393160 · TK1151

Nucleus0.502

Rank 2 · TkA08G393160 · TK1151

Mitochondrion0.067

Rank 3 · TkA08G393160 · TK1151

Cell membrane0.052

Rank 4 · TkA08G393160 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkA08G393160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01633Choline_kinase37-338 aa

PF01636APH64-244 aa

PF02958EcKL154-240 aa

PF12330Haspin_kinase189-228 aa

PF19974TCAD9193-237 aa

PF00069Pkinase199-230 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G393160	`PF01633`	Choline_kinase	37	338	1.1e-95	321.2
TkA08G393160	`PF01636`	APH	64	244	4.6e-14	53.5
TkA08G393160	`PF02958`	EcKL	154	240	0.00021	21.5
TkA08G393160	`PF12330`	Haspin_kinase	189	228	0.0018	18.1
TkA08G393160	`PF19974`	TCAD9	193	237	0.0028	17.6
TkA08G393160	`PF00069`	Pkinase	199	230	0.055	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L518`	Arabidopsis thaliana	sp\|Q8L518\|CK2_ARATH Probable choline kinase 2	65.600%	Swiss-Prot	High
`Q9M9H6`	Arabidopsis thaliana	sp\|Q9M9H6\|CK1_ARATH Probable choline kinase 1	58.500%	Swiss-Prot	High
`Q9SZ92`	Arabidopsis thaliana	sp\|Q9SZ92\|CK3_ARATH Probable choline kinase 3	56.900%	Swiss-Prot	High

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