TkA08G390610 | RubberDandelionOmics

Gene overview

TkA08G390610

Reference: TK1151 Chr: Chr08 Coordinates: 99586254-99590004 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1633 bp · TkA08G390610|TK1151|cDNA

AAAAGACAAAGTATTTATATTCACATAATTAAAGCATTATCCTTCAAAAGTTGCTTAAAAAGCCCCGAAAGGCTCTTGCATTAACACATATACCAAACTCCAATAAAAGTCCAAATCCCATGAAGCATAAATCTAGCCAAGTTGTAGGCTTTTAATGTCTCATCGTGTCCCTTCTAATATCCTCTCATACATACAAACAAAGAACCATCTCCGAAATGGCTACTCTGAGTACCCTTGAACTCATGCTTCATGAAATCCAA...

CDS

Download CDS FASTA

1125 bp · TkA08G390610|TK1151|CDS

ATGGCTACTCTGAGTACCCTTGAACTCATGCTTCATGAAATCCAAAACCAAGAAAATACCGGTGATCATGGGAGGATGCCAGTGTTGCCTCAACGTCCGGTCTCAAAGGCTCGGATACCGTCTAGAAGAACTAGAAGGGCAATCTTGTCATTTCACTTGCACGAATTTGGTGGCAAGAATGAGTTTGTTGATGTCAAGAGCAAAGGAGAAAGATTTGCATTTGTTGATGATGGCGGCCTTGTTCTTAGTAAGAACAATGA...

Protein

Download Protein FASTA

374 aa · TkA08G390610|TK1151|PROTEIN

MATLSTLELMLHEIQNQENTGDHGRMPVLPQRPVSKARIPSRRTRRAILSFHLHEFGGKNEFVDVKSKGERFAFVDDGGLVLSKNNEDEKEKAVLQIQKCFRRYQARFLYYKLKEGIITLQSFVRGENARRELRKWTKVPTQMHVNQEFVWKPLRNRETTIIYLQSVVRDWLSRKNTNYIQNAPTETKNDANNLHNDDMENEEHVMVSEPYICDLQRQVMRIEAALRHKKRENSILALQIRQIDAKWELHKAEMSSKEKT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G390610`
TK1151 ID	TkA08G390610
OH-1004 ID	LXL04_034457
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G390610

Location Chr08:99586254-99590004 (+)

Description Similar to VIII-2: Myosin-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54280`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At4g27370`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g50360`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At3g19960`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034457 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006897 endocytosis Biological Process

GO:0007015 actin filament organization Biological Process

GO:0010082 regulation of root meristem growth Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009524 phragmoplast Cellular Component

KEGG gene cross-reference

ath:AT1G50360

ath:AT3G19960

ath:AT4G27370

ath:AT5G54280

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.514

Rank 1 · TkA08G390610 · TK1151

Nucleus0.295

Rank 2 · TkA08G390610 · TK1151

Cell membrane0.114

Rank 3 · TkA08G390610 · TK1151

Mitochondrion0.078

Rank 4 · TkA08G390610 · TK1151

Golgi apparatus0.067

Rank 5 · TkA08G390610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00827Ribosomal_L15e89-149 aa

PF00612IQ91-107 aa

PF00612IQ116-134 aa

PF00612IQ161-176 aa

PF07926TPR_MLP1_2225-281 aa

PF07926TPR_MLP1_2328-347 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G390610	`PF00827`	Ribosomal_L15e	89	149	0.004	17.6
TkA08G390610	`PF00612`	IQ	91	107	1.4e-10	40.7
TkA08G390610	`PF00612`	IQ	116	134	1.4e-10	40.7
TkA08G390610	`PF00612`	IQ	161	176	1.4e-10	40.7
TkA08G390610	`PF07926`	TPR_MLP1_2	225	281	0.98	10.2
TkA08G390610	`PF07926`	TPR_MLP1_2	328	347	0.98	10.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K0A6`	Arabidopsis thaliana	sp\|F4K0A6\|MYO2_ARATH Myosin-2	29.300%	Swiss-Prot	Low
`F4JIU4`	Arabidopsis thaliana	sp\|F4JIU4\|MYO4_ARATH Myosin-4	29.500%	Swiss-Prot	Low
`F4I507`	Arabidopsis thaliana	sp\|F4I507\|MYO3_ARATH Myosin-3	31.000%	Swiss-Prot	Medium
`Q9LHE9`	Arabidopsis thaliana	sp\|Q9LHE9\|MYO1_ARATH Myosin-1	31.500%	Swiss-Prot	Medium

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