Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3230 bp · TkA08G390150|TK1151|cDNA
AAGTGCAAGACTTTTATTTATAAACGGATAATATATATTTTTTTCCCTTCTACGCAGGAGAGATCTCTCTCGTTAAGCTTCTAGGGTTTTAAGAAGGCATTTTCTAATGGTTACAGTGTCGATGGATCTTTGAAGAGTCCTTTTGGGTTTTCAAAATTTAGATTTTGCTATTGTAAATTACAAGTACGTAATCTCACCACATACAAACTTTCATCAATGTCGATTCCAAGCGACTTGTATCCAAGCCAAGACGATCTTCT...
2760 bp · TkA08G390150|TK1151|CDS
ATGTCGATTCCAAGCGACTTGTATCCAAGCCAAGACGATCTTCTGTACGAGGAAGAACTCCTCAGAAACCCCTTTAGTCTGAAGCTATGGTGGCGTTACTTAATTGCACGAACCGAATCTCCCTTCAAGAAAAGAGCCGTAATCTACGAACGAGCGCTCAAAGCTCTTCCCGGAAGCTACAAACTATGGCATGCTTACCTCCGCGAACGCCTCGAATTGGTACGTAATTTACCCATTTCTCACTCACAATACCAAACCCT...
Protein
Download Protein FASTA919 aa · TkA08G390150|TK1151|PROTEIN
MSIPSDLYPSQDDLLYEEELLRNPFSLKLWWRYLIARTESPFKKRAVIYERALKALPGSYKLWHAYLRERLELVRNLPISHSQYQTLNNTFERALVTMHKMPRIWFMYLTSLTEQKLVTRTRRTFDRALCALPVTQHERIWDPYLVFVSQRGVPIETSLRVYRRYLKYDPGHIENLIEFLLNSGLWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G390150 |
|---|---|
| TK1151 ID | TkA08G390150 |
| OH-1004 ID | LXL04_034458 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G390150 |
|---|---|
| Location | Chr08:99506635-99511840 (+) |
| Description | Similar to Xab2: Pre-mRNA-splicing factor SYF1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000349 generation of catalytic spliceosome for first transesterification step Biological Process GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006281 DNA repair Biological Process GO:0006283 transcription-coupled nucleotide-excision repair Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0008380 RNA splicing Biological Process GO:0000974 Prp19 complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0016020 membrane Cellular Component |
| KEGG gene cross-reference | ddi:DDB_G0277977 dme:Dmel_CG6197 hsa:56949 mmu:67439 rno:245976 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23233HAT_Syf1_CNRKL1_N12-170 aaPF23240HAT_PRP39_N16-144 aaPF05843Suf16-121 aaPF23241HAT_PRP39_C27-68 aaPF13429TPR_1535-67 aaPF29376PRP6_TPR42-131 aaPF13428TPR_1446-67 aaPF14559TPR_1948-64 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G390150 | PF23233 | HAT_Syf1_CNRKL1_N | 12 | 170 | 4e-73 | 245.2 |
| TkA08G390150 | PF23240 | HAT_PRP39_N | 16 | 144 | 4.5e-30 | 105.6 |
| TkA08G390150 | PF05843 | Suf | 16 | 121 | 1.1e-13 | 51.3 |
| TkA08G390150 | PF23241 | HAT_PRP39_C | 27 | 68 | 2.8e-28 | 99.5 |
| TkA08G390150 | PF13429 | TPR_15 | 35 | 67 | 5.3e-07 | 30.1 |
| TkA08G390150 | PF29376 | PRP6_TPR | 42 | 131 | 3.4e-16 | 59.7 |
| TkA08G390150 | PF13428 | TPR_14 | 46 | 67 | 8.4e-22 | 76.2 |
| TkA08G390150 | PF14559 | TPR_19 | 48 | 64 | 4e-07 | 31.0 |
| TkA08G390150 | PF07719 | TPR_2 | 49 | 57 | 1e-06 | 29.1 |
| TkA08G390150 | PF23240 | HAT_PRP39_N | 80 | 169 | 4.5e-30 | 105.6 |
| TkA08G390150 | PF23241 | HAT_PRP39_C | 80 | 178 | 2.8e-28 | 99.5 |
| TkA08G390150 | PF23231 | HAT_Syf1_CNRKL1_C | 90 | 165 | 1e-189 | 631.1 |
| TkA08G390150 | PF13429 | TPR_15 | 100 | 174 | 5.3e-07 | 30.1 |
| TkA08G390150 | PF23055 | DUF7041 | 100 | 137 | 0.18 | 12.9 |
| TkA08G390150 | PF13428 | TPR_14 | 102 | 133 | 8.4e-22 | 76.2 |
| TkA08G390150 | PF13432 | TPR_16 | 158 | 191 | 0.077 | 14.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.