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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G384860
Reference: TK1151 Chr: Chr08 Coordinates: 98300763-98307978 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4591 bp · TkA08G384860|TK1151|cDNA

GAAACGAAAATCATACTACACACTCGCTAACCCCTCTTCGCCCTTTTCTCTTCTCTCTCACAGAGTAACCACACGCTCGCCCTCGGCCGCCACAGCCTCCACCCCTTCATTCCCTTCTCAAGTCTCTGCTATTCGTACACAACTTTCTCTTAATTTCCTGTATTTTATCCGCCGATTTCAATCGGTGATAGTCAAATACAGGTGATTGGGAAGTAGATATGGCTGGGAAATCAAGCAGAGGACGGAATAAGAAAGCGGCA...

CDS

Download CDS FASTA

1797 bp · TkA08G384860|TK1151|CDS

ATGGACGGCCATACACTCACTGAAGCACTCCATGCACATGGGATTAATGTTCGCTATATTGGCACAGTAGCTGAGGGTACTAAGCACTTGCCTCATTTATGGGATCTTTGTTCCAATGAGATCACTGTTAGATGTGCAAAACACATCCTCAAGGACATGTTGAGAGATACAGCAGATCATGACATCGGGCCCGCAGTTGCTCACTTTTTCAATTGTCTATTTGGAGATTGTGAGGCGGTTTCCGGAAAAACTGTCGCTAA...

Protein

Download Protein FASTA

598 aa · TkA08G384860|TK1151|PROTEIN

MDGHTLTEALHAHGINVRYIGTVAEGTKHLPHLWDLCSNEITVRCAKHILKDMLRDTADHDIGPAVAHFFNCLFGDCEAVSGKTVANNNNNNTQSKNQKKEVVGKSSKGHSRSKAGGGAFTVGSNKKQASCMSLSSETLWADILEFAKLKYQFELPNDARSRVKKISVIRNLCLKVGVTIAAKKYDLITATPFQTADILNLQPVVKHSIPVCSEAKELVETGKVQLAEGMLNEAYTLFTEAFTILQQVTGPMHREVANCC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G384860
TK1151 IDTkA08G384860
OH-1004 IDLXL04_034226
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)94.600
Protein coverage (%)TK1151 100.000 / OH-1004 43.691
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G384860
LocationChr08:98300763-98307978 (+)
DescriptionSimilar to FMT: Clustered mitochondria protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52140 mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (By similarity). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034226 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000266 mitochondrial fission Biological Process
GO:0000281 mitotic cytokinesis Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0008053 mitochondrial fusion Biological Process
GO:0010636 positive regulation of mitochondrial fusion Biological Process
GO:0019750 chloroplast localization Biological Process
GO:0048312 intracellular distribution of mitochondria Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G52140
cqu:CpipJ_CPIJ001445
ddi:DDB_G0292806
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592
Rank 1 · TkA08G384860 · TK1151
Nucleus0.314
Rank 2 · TkA08G384860 · TK1151
Cell membrane0.106
Rank 3 · TkA08G384860 · TK1151
Golgi apparatus0.080
Rank 4 · TkA08G384860 · TK1151
Endoplasmic reticulum0.061
Rank 5 · TkA08G384860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12807eIF3_p1351-186 aa
PF24885TPR_NPHP3205-326 aa
PF07719TPR_2216-242 aa
PF13428TPR_14216-243 aa
PF17874TPR_MalT217-276 aa
PF10952DUF2753219-257 aa
PF00515TPR_1222-243 aa
PF13181TPR_8223-243 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G384860PF12807eIF3_p13511864.4e-47161.1
TkA08G384860PF24885TPR_NPHP32053267.9e-1865.4
TkA08G384860PF07719TPR_22162427.7e-0523.2
TkA08G384860PF13428TPR_142162430.8311.3
TkA08G384860PF17874TPR_MalT2172760.001518.6
TkA08G384860PF10952DUF27532192570.02115.7
TkA08G384860PF00515TPR_12222430.0006720.1
TkA08G384860PF13181TPR_82232430.001719.1
TkA08G384860PF13424TPR_122242781.2e-34119.0
TkA08G384860PF13176TPR_72242410.06614.0
TkA08G384860PF13374TPR_102322531.1e-2073.6
TkA08G384860PF23914TPR_CcmH_CycH2402770.02914.9
TkA08G384860PF12807eIF3_p1352482884.4e-47161.1
TkA08G384860PF13374TPR_102562971.1e-2073.6
TkA08G384860PF07719TPR_22572767.7e-0523.2
TkA08G384860PF00515TPR_12582770.0006720.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4J5S1Arabidopsis thalianasp|F4J5S1|CLU_ARATH Clustered mitochondria protein68.100%Swiss-ProtHigh

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