TkA08G375160 | RubberDandelionOmics

Gene overview

TkA08G375160

Reference: TK1151 Chr: Chr08 Coordinates: 95932774-95933306 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

318 bp · TkA08G375160|TK1151|cDNA

ATGTTTTGGTTTGGATCTGTATGGCACTATATAGATAAAGAGTTTGGAACTCGTGTTTTGAGGTTAAGTGTTGGACATGATCACAATGATTGCCTTCTTGCGAGAAAAATAGGTCTTCCTATACTTAATGTCATGAACAAAGATGGGACACTCAACGAGCCTTTGGTGAGCAAGAAGTGGTTTGGGATCCTGGAGCCTTTGGTTGAAAAAACTCTTGACATAGTGAAAAAAGGTGAGTTGACGATTATGATCGATAGATT...

CDS

Download CDS FASTA

318 bp · TkA08G375160|TK1151|CDS

ATGTTTTGGTTTGGATCTGTATGGCACTATATAGATAAAGAGTTTGGAACTCGTGTTTTGAGGTTAAGTGTTGGACATGATCACAATGATTGCCTTCTTGCGAGAAAAATAGGTCTTCCTATACTTAATGTCATGAACAAAGATGGGACACTCAACGAGCCTTTGGTGAGCAAGAAGTGGTTTGGGATCCTGGAGCCTTTGGTTGAAAAAACTCTTGACATAGTGAAAAAAGGTGAGTTGACGATTATGATCGATAGATT...

Protein

Download Protein FASTA

105 aa · TkA08G375160|TK1151|PROTEIN

MFWFGSVWHYIDKEFGTRVLRLSVGHDHNDCLLARKIGLPILNVMNKDGTLNEPLVSKKWFGILEPLVEKTLDIVKKGELTIMIDRFEKVCMLYIFFIINSICFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G375160`
TK1151 ID	TkA08G375160
OH-1004 ID	LXL04_039063
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.300
Protein coverage (%)	TK1151 91.429 / OH-1004 74.603 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G375160

Location Chr08:95932774-95933306 (-)

Description Similar to EMB2247: Valine--tRNA ligase, chloroplastic/mitochondrial 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16715`	Valine--tRNA ligase, chloroplastic/mitochondrial 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039063 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006438 valyl-tRNA aminoacylation Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0002161 aminoacyl-tRNA deacylase activity Molecular Function

GO:0004832 valine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G16715

ban:BA_4690

bar:GBAA_4690

bat:BAS4355

btk:BT9727_4191

fnu:FN2011

tde:TDE_1364

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.395

Rank 1 · TkA08G375160 · TK1151

Peroxisome0.180

Rank 2 · TkA08G375160 · TK1151

Nucleus0.178

Rank 3 · TkA08G375160 · TK1151

Mitochondrion0.136

Rank 4 · TkA08G375160 · TK1151

Extracellular0.083

Rank 5 · TkA08G375160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28701PnsB4_N6-12 aa

PF18817HEAT_UF43-58 aa

PF18817HEAT_UF64-79 aa

PF28701PnsB4_N89-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G375160	`PF28701`	PnsB4_N	6	12	0.24	11.9
TkA08G375160	`PF18817`	HEAT_UF	43	58	0.22	12.7
TkA08G375160	`PF18817`	HEAT_UF	64	79	0.22	12.7
TkA08G375160	`PF28701`	PnsB4_N	89	105	0.24	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4KE63`	Arabidopsis thaliana	sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2	77.300%	Swiss-Prot	Low

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