LXL04_039063 | RubberDandelionOmics

Gene overview

LXL04_039063

Reference: OH-1004 Chr: Chr09 Coordinates: 58168417-58169043 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

381 bp · LXL04_039063|LXL04_039063|OH1004|cDNA

ATGCGGGCATCAAATCTGATATATATTGACCAACCTACTGGAACAGGGTTTAGTTATAGCTCTGTTAGAAGAGACATTCGGTATGATGAACAAGGTTATGTAGATAAAGAGTTTGGAACTCGTGTTTTGAGGATAACTGTTGGACATGATCACAATGATTACCTTCTTGCGAGAAAATTAGGTATTCCTAATGTCATGAACAAAGATGGGACACTCAACGAGCCTTTGCTGAGCAAGCAGTGGTTTGTGATCATGGAGCC...

CDS

Download CDS FASTA

381 bp · LXL04_039063|LXL04_039063|OH1004|CDS

ATGCGGGCATCAAATCTGATATATATTGACCAACCTACTGGAACAGGGTTTAGTTATAGCTCTGTTAGAAGAGACATTCGGTATGATGAACAAGGTTATGTAGATAAAGAGTTTGGAACTCGTGTTTTGAGGATAACTGTTGGACATGATCACAATGATTACCTTCTTGCGAGAAAATTAGGTATTCCTAATGTCATGAACAAAGATGGGACACTCAACGAGCCTTTGCTGAGCAAGCAGTGGTTTGTGATCATGGAGCC...

Protein

Download Protein FASTA

126 aa · LXL04_039063|LXL04_039063|OH1004|PROTEIN

MRASNLIYIDQPTGTGFSYSSVRRDIRYDEQGYVDKEFGTRVLRITVGHDHNDYLLARKLGIPNVMNKDGTLNEPLLSKQWFVIMEPLAEKPLDIVKKGELTIMIDRFKNVYMLYIFIIINSICFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039063`
TK1151 ID	TkA08G375160
OH-1004 ID	LXL04_039063
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.300
Protein coverage (%)	TK1151 91.429 / OH-1004 74.603 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039063

Location Chr09:58168417-58169043 (+)

Description Similar to EMB2247: Valine--tRNA ligase, chloroplastic/mitochondrial 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16715`	Valine--tRNA ligase, chloroplastic/mitochondrial 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_039063 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006438 valyl-tRNA aminoacylation Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0002161 aminoacyl-tRNA deacylase activity Molecular Function

GO:0004832 valine-tRNA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G16715

ban:BA_4690

bar:GBAA_4690

bat:BAS4355

btk:BT9727_4191

fnu:FN2011

tde:TDE_1364

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.304

Rank 1 · LXL04_039063 · OH-1004

Extracellular0.257

Rank 2 · LXL04_039063 · OH-1004

Nucleus0.176

Rank 3 · LXL04_039063 · OH-1004

Peroxisome0.109

Rank 4 · LXL04_039063 · OH-1004

Mitochondrion0.086

Rank 5 · LXL04_039063 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S102-32 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039063	`PF00450.29`	Peptidase_S10	2	32	6.7e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4KE63`	Arabidopsis thaliana	Valine--tRNA ligase, chloroplastic/mitochondrial 2	43.284%	Swiss-Prot	moderate database homology

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