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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G361690
Reference: TK1151 Chr: Chr08 Coordinates: 92679771-92686564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3695 bp · TkA08G361690|TK1151|cDNA

TAGACGTATGACTCAAATTGAGTAAATTTTTGTACGCGATTCAGATTTTATTGAGGGTAAAAGCACGTCTTTAATGACATATTGTATTTACCAAAAAGTTGTGTTGTTTTTGGCGCCAATTTCACTCCTGGTTCTTCTTTGACGAGACCTCTCTTCGTGATGATATCTTCTTCTTGATACGGACCTGCAAACCCTAGTTCTCTCCAAGATACTCTAAATTCAACTGATAACCAAGTTGATTGAAGCTCCAAAGAATGGGC...

CDS

Download CDS FASTA

3156 bp · TkA08G361690|TK1151|CDS

ATGGGCGAACCCCGAGCTAAGCGTCCGAAAATCAGCAGGGGCGCAGATGATTACTTACCAGGAAACATAGTTGAAATTGAGATCCACAACTTCATGACTTTCAATCATCTTGTATGCAAGCCTGGTTCTCGCTTGAATCTTGTCATTGGTCCAAATGGATCCGGTAAAAGCTCTCTGGTGTGTGCAATTGCTCTTGGTTTAGGTGGTGAACCTCAGCTTTTGGGAAGGGCAGGGACTGTTGGTGCATTTGTGAAACGTGG...

Protein

Download Protein FASTA

1051 aa · TkA08G361690|TK1151|PROTEIN

MGEPRAKRPKISRGADDYLPGNIVEIEIHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRAGTVGAFVKRGEESGYTKITLRGDTPNEKLIITRKIDSRNKSDWLFNGRTVSKKEILEVIQKFNIQVNNLTQFLPQDRVCEFAKLSPVRLLEETEKAVGDPQLPVLHRALVDTSAEVQRSEQAVEKNKETLSQLKALNAEQERDVERVRQRDELLAKAESMKKKLPWLKYDMKKAEYLEAKELE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G361690
TK1151 IDTkA08G361690
OH-1004 IDLXL04_034120
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G361690
LocationChr08:92679771-92686564 (+)
DescriptionSimilar to SMC5: Structural maintenance of chromosomes protein 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g15920 Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
The STRUCTURAL MAINTENANCE OF CHROMOSOMES 5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.060525

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034120 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0016925 protein sumoylation Biological Process
GO:0018393 internal peptidyl-lysine acetylation Biological Process
GO:0019827 stem cell population maintenance Biological Process
GO:0030261 chromosome condensation Biological Process
GO:0032204 regulation of telomere maintenance Biological Process
GO:0034184 positive regulation of maintenance of mitotic sister chromatid cohesion Biological Process
GO:0044772 mitotic cell cycle phase transition Biological Process
KEGG gene cross-reference
ath:AT5G15920
dre:566749
hsa:23137
mmu:226026
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.885
Rank 1 · TkA08G361690 · TK1151
Cytoplasm0.192
Rank 2 · TkA08G361690 · TK1151
Mitochondrion0.034
Rank 3 · TkA08G361690 · TK1151
Cell membrane0.027
Rank 4 · TkA08G361690 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkA08G361690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02463SMC_N23-989 aa
PF13555AAA_2925-65 aa
PF13476AAA_2326-268 aa
PF00005ABC_tran39-64 aa
PF13191AAA_1640-64 aa
PF13304AAA_2145-81 aa
PF01191RNA_pol_Rpb5_C126-162 aa
PF20292MC7131-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G361690PF02463SMC_N239891.2e-2281.1
TkA08G361690PF13555AAA_2925650.0001122.6
TkA08G361690PF13476AAA_23262684.1e-0628.3
TkA08G361690PF00005ABC_tran39640.1413.5
TkA08G361690PF13191AAA_1640640.3412.1
TkA08G361690PF13304AAA_2145817.9e-0730.0
TkA08G361690PF01191RNA_pol_Rpb5_C1261620.6210.6
TkA08G361690PF20292MC71311470.003917.9
TkA08G361690PF00005ABC_tran2152750.1413.5
TkA08G361690PF01191RNA_pol_Rpb5_C2262570.6210.6
TkA08G361690PF20292MC73153330.003917.9
TkA08G361690PF00005ABC_tran3873870.1413.5
TkA08G361690PF01191RNA_pol_Rpb5_C3914020.6210.6
TkA08G361690PF00005ABC_tran6236940.1413.5
TkA08G361690PF13476AAA_237378344.1e-0628.3
TkA08G361690PF13191AAA_167978150.3412.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFS8Arabidopsis thalianasp|Q9LFS8|SMC5_ARATH Structural maintenance of chromosomes protein 561.700%Swiss-ProtHigh

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