TkA08G328770 | RubberDandelionOmics

Gene overview

TkA08G328770

Reference: TK1151 Chr: Chr08 Coordinates: 84616509-84617308 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

687 bp · TkA08G328770|TK1151|cDNA

ATGATACAAGGTTTTGGTAACACAAACTTTGACACCCCATCTGATGATAAAAAGTCATTCCTCAGTGATATGGTTGGGATTGGAAGTGCAACAATCAAACAGGGGTTAAATATCTTTTCGCAAGCTCAAACCCATAATAGAAATGACACAGGAACTTACAGGGGCCCTAATCTTAGAAGATCATTGACTAATGAAACGAGTTACTCTGATAGCAGAGAAGTTCCTAGTCAAGCTGTATCAACAAATGCATCTGGATCATG...

CDS

Download CDS FASTA

687 bp · TkA08G328770|TK1151|CDS

ATGATACAAGGTTTTGGTAACACAAACTTTGACACCCCATCTGATGATAAAAAGTCATTCCTCAGTGATATGGTTGGGATTGGAAGTGCAACAATCAAACAGGGGTTAAATATCTTTTCGCAAGCTCAAACCCATAATAGAAATGACACAGGAACTTACAGGGGCCCTAATCTTAGAAGATCATTGACTAATGAAACGAGTTACTCTGATAGCAGAGAAGTTCCTAGTCAAGCTGTATCAACAAATGCATCTGGATCATG...

Protein

Download Protein FASTA

228 aa · TkA08G328770|TK1151|PROTEIN

MIQGFGNTNFDTPSDDKKSFLSDMVGIGSATIKQGLNIFSQAQTHNRNDTGTYRGPNLRRSLTNETSYSDSREVPSQAVSTNASGSWGQDLKTSHTDTENGNASSSYSNEKSREERLLETIVTSGGVRLQPTRDAIQVFLMEASKLNALALSHALEVKLQSHMWQVRVKAICVLEAILRKKDDESFSITTSYFTENLDAVVKCSESPQASLREKANKVYNNTIHVIYS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G328770`
TK1151 ID	TkA08G328770
OH-1004 ID	LXL04_034007
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G328770

Location Chr08:84616509-84617308 (+)

Description Similar to MTV1: Protein MODIFIED TRANSPORT TO THE VACUOLE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16270`	Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034007 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0035652 clathrin-coated vesicle cargo loading Biological Process

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0030136 clathrin-coated vesicle Cellular Component

GO:0032588 trans-Golgi network membrane Cellular Component

GO:0030276 clathrin binding Molecular Function

GO:0035091 phosphatidylinositol binding Molecular Function

GO:0043130 ubiquitin binding Molecular Function

KEGG gene cross-reference

ath:AT3G16270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.436

Rank 1 · TkA08G328770 · TK1151

Golgi apparatus0.377

Rank 2 · TkA08G328770 · TK1151

Nucleus0.170

Rank 3 · TkA08G328770 · TK1151

Endoplasmic reticulum0.154

Rank 4 · TkA08G328770 · TK1151

Cell membrane0.103

Rank 5 · TkA08G328770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25827TVHS-like113-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G328770	`PF25827`	TVHS-like	113	218	0.00041	20.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H4`	Arabidopsis thaliana	sp\|Q9C5H4\|MTV1_ARATH Protein MODIFIED TRANSPORT TO THE VACUOLE 1	59.200%	Swiss-Prot	High

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