LXL04_034007 | RubberDandelionOmics

Gene overview

LXL04_034007

Reference: OH-1004 Chr: Chr07 Coordinates: 74293869-74294668 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

687 bp · LXL04_034007|LXL04_034007|OH1004|cDNA

ATGATACAAGGTTTTGGTAACACAAACTTTGACACCCCATCTGATGATAAAAAGTCATTCCTCAGTGATATGGTTGGGATTGGAAGTGCAACAATCAAACAGGGGTTAAATAGCTTTTCGCAAGCTCAAACCCATAATAGAAATGACACAGGAACTTACAGGGGCCCTAATCTTAGAAGATCATTGACTAATGAAACGAGTTACTCTGATAGCAGAGAAGTTCCTAGTCAAGCTGTATCAACAAATGCATCTGGATCATG...

CDS

Download CDS FASTA

687 bp · LXL04_034007|LXL04_034007|OH1004|CDS

ATGATACAAGGTTTTGGTAACACAAACTTTGACACCCCATCTGATGATAAAAAGTCATTCCTCAGTGATATGGTTGGGATTGGAAGTGCAACAATCAAACAGGGGTTAAATAGCTTTTCGCAAGCTCAAACCCATAATAGAAATGACACAGGAACTTACAGGGGCCCTAATCTTAGAAGATCATTGACTAATGAAACGAGTTACTCTGATAGCAGAGAAGTTCCTAGTCAAGCTGTATCAACAAATGCATCTGGATCATG...

Protein

Download Protein FASTA

228 aa · LXL04_034007|LXL04_034007|OH1004|PROTEIN

MIQGFGNTNFDTPSDDKKSFLSDMVGIGSATIKQGLNSFSQAQTHNRNDTGTYRGPNLRRSLTNETSYSDSREVPSQAVSTNASGSWGQDLKTSHTDTENGNASSSYSNEKSREERLLETIVTSGGVCLQPTRDAIQVFLMEASKLNALALSHALEVKLQSHMWQVRVKAICVLEAILRKKDDESFSITTSYFTENLDAVVKCSESPQASLREKANKVYNNTIHVIYS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034007`
TK1151 ID	TkA08G328770
OH-1004 ID	LXL04_034007
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034007

Location Chr07:74293869-74294668 (+)

Description Similar to MTV1: Protein MODIFIED TRANSPORT TO THE VACUOLE 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16270`	Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_034007 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0035652 clathrin-coated vesicle cargo loading Biological Process

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0030136 clathrin-coated vesicle Cellular Component

GO:0032588 trans-Golgi network membrane Cellular Component

GO:0030276 clathrin binding Molecular Function

GO:0035091 phosphatidylinositol binding Molecular Function

GO:0043130 ubiquitin binding Molecular Function

KEGG gene cross-reference

ath:AT3G16270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.423

Rank 1 · LXL04_034007 · OH-1004

Golgi apparatus0.363

Rank 2 · LXL04_034007 · OH-1004

Nucleus0.179

Rank 3 · LXL04_034007 · OH-1004

Endoplasmic reticulum0.159

Rank 4 · LXL04_034007 · OH-1004

Cell membrane0.107

Rank 5 · LXL04_034007 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5H4`	Arabidopsis thaliana	Protein MODIFIED TRANSPORT TO THE VACUOLE 1	57.269%	Swiss-Prot	strong database homology

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