TkA08G326950 | RubberDandelionOmics

Gene overview

TkA08G326950

Reference: TK1151 Chr: Chr08 Coordinates: 84198576-84199435 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

540 bp · TkA08G326950|TK1151|cDNA

TTCGGTACCGCCACCAAGAACTTCCGTCCAGATAGTATCGTCGGAGAAGAAGGCTTTGGTCGTGTTTTCAAAGCAAACCCCGGCACCGGTCAACTTATTGCGGTCAAAGTTCTTAAATCCGAATGCCATCAAGGTCATAGAGAGTGGCTGACAGAGGTCGATTACTTGGGAAAGCTTCGTCATAAAAATCTGGTTAAACTCATTGGGTATTGCGAGGAATGTGAAAACAGACTTTTGGTTTACGAGTTCATGCCAAAAGG...

CDS

Download CDS FASTA

540 bp · TkA08G326950|TK1151|CDS

TTCGGTACCGCCACCAAGAACTTCCGTCCAGATAGTATCGTCGGAGAAGAAGGCTTTGGTCGTGTTTTCAAAGCAAACCCCGGCACCGGTCAACTTATTGCGGTCAAAGTTCTTAAATCCGAATGCCATCAAGGTCATAGAGAGTGGCTGACAGAGGTCGATTACTTGGGAAAGCTTCGTCATAAAAATCTGGTTAAACTCATTGGGTATTGCGAGGAATGTGAAAACAGACTTTTGGTTTACGAGTTCATGCCAAAAGG...

Protein

Download Protein FASTA

179 aa · TkA08G326950|TK1151|PROTEIN

FGTATKNFRPDSIVGEEGFGRVFKANPGTGQLIAVKVLKSECHQGHREWLTEVDYLGKLRHKNLVKLIGYCEECENRLLVYEFMPKGCLENHLFRKGVEPISWAIRMRIAIDVAEGLSFLHSNEPDHIIYRDLKAANILLDSEFTARLSDFGLARIGPVGDNTHVSTRVVIQVRFYSLH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G326950`
TK1151 ID	TkA08G326950
OH-1004 ID	LXL04_004250
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.600
Protein coverage (%)	TK1151 93.855 / OH-1004 43.415 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G326950

Location Chr08:84198576-84199435 (+)

Description Similar to PBL3: Probable serine/threonine-protein kinase PBL3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02800`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868
`At1g69790`	May be involved in plant defense signaling.	No verified direct reference in this release
`At1g26970`	May be involved in plant defense signaling.	No verified direct reference in this release
`At5g02290`	May play a role in the regulation of plant growth and development (Probable).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004250 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G14370

ath:AT1G26970

ath:AT1G69790

ath:AT2G02800

dosa:Os05g0110900

osa:4337593

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.468

Rank 1 · TkA08G326950 · TK1151

Cell membrane0.423

Rank 2 · TkA08G326950 · TK1151

Nucleus0.239

Rank 3 · TkA08G326950 · TK1151

Golgi apparatus0.055

Rank 4 · TkA08G326950 · TK1151

Endoplasmic reticulum0.049

Rank 5 · TkA08G326950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase11-160 aa

PF07714PK_Tyr_Ser-Thr13-177 aa

PF03109ABC119-61 aa

PF03418Peptidase_A2538-84 aa

PF12260PIP49_C64-150 aa

PF03418Peptidase_A25120-160 aa

PF03109ABC1125-155 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G326950	`PF00069`	Pkinase	11	160	1.2e-29	104.2
TkA08G326950	`PF07714`	PK_Tyr_Ser-Thr	13	177	4.9e-31	108.7
TkA08G326950	`PF03109`	ABC1	19	61	0.016	15.1
TkA08G326950	`PF03418`	Peptidase_A25	38	84	0.34	10.5
TkA08G326950	`PF12260`	PIP49_C	64	150	0.15	12.4
TkA08G326950	`PF03418`	Peptidase_A25	120	160	0.34	10.5
TkA08G326950	`PF03109`	ABC1	125	155	0.016	15.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49840`	Arabidopsis thaliana	sp\|O49840\|PBL3_ARATH Probable serine/threonine-protein kinase PBL3	64.400%	Swiss-Prot	High
`O49839`	Arabidopsis thaliana	sp\|O49839\|PBL2_ARATH Probable serine/threonine-protein kinase PBL2	63.300%	Swiss-Prot	High
`Q5XF79`	Arabidopsis thaliana	sp\|Q5XF79\|PBL18_ARATH Probable serine/threonine-protein kinase PBL18	61.800%	Swiss-Prot	High
`Q5PP29`	Arabidopsis thaliana	sp\|Q5PP29\|PBL4_ARATH Probable serine/threonine-protein kinase PBL4	61.500%	Swiss-Prot	High
`P43293`	Arabidopsis thaliana	sp\|P43293\|PBL11_ARATH Probable serine/threonine-protein kinase PBL11	62.800%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card