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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G319570
Reference: TK1151 Chr: Chr08 Coordinates: 82568486-82569697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1212 bp · TkA08G319570|TK1151|cDNA

ATGAACCTTCCTAGTTCAGCCGATTGTCTATCCACCCCACTCCTATCAACCACCACAACCACCACCAGTAGCAGCGACGCCGACGAAAGTCCGGCCACCTCCCACCGTTTCATTCCGTACAATATACCCAAAACACTAAGCTCCTCCTGTTCCTCATACCGGTCACTATCTGTCCTCACCGGCCACGGTGGATCAGTTTCATGTCTGGCCATATGCGGTGAGTTCATCCTCAGCGCCTCCCACGGAAAAGACATCATCGT...

CDS

Download CDS FASTA

1212 bp · TkA08G319570|TK1151|CDS

ATGAACCTTCCTAGTTCAGCCGATTGTCTATCCACCCCACTCCTATCAACCACCACAACCACCACCAGTAGCAGCGACGCCGACGAAAGTCCGGCCACCTCCCACCGTTTCATTCCGTACAATATACCCAAAACACTAAGCTCCTCCTGTTCCTCATACCGGTCACTATCTGTCCTCACCGGCCACGGTGGATCAGTTTCATGTCTGGCCATATGCGGTGAGTTCATCCTCAGCGCCTCCCACGGAAAAGACATCATCGT...

Protein

Download Protein FASTA

403 aa · TkA08G319570|TK1151|PROTEIN

MNLPSSADCLSTPLLSTTTTTTSSSDADESPATSHRFIPYNIPKTLSSSCSSYRSLSVLTGHGGSVSCLAICGEFILSASHGKDIIVWQQPDLRQFTKFGQGEGSVKALVTAGNKVFTAHQDSRIRVWKVSRSSENIFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLSVHDGLIYSGSWDKTLKVWRISDLKCLESIKAHDDAINSLIASNGVVYSASADGKIKAWGRTETDPKSSHSLKGILEGH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G319570
TK1151 IDTkA08G319570
OH-1004 IDLXL04_033958
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G319570
LocationChr08:82568486-82569697 (-)
DescriptionSimilar to JGB: Protein JINGUBANG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26490 Negative regulator of pollen germination. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033958 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000132 establishment of mitotic spindle orientation Biological Process
GO:0000209 protein polyubiquitination Biological Process
GO:0000281 mitotic cytokinesis Biological Process
GO:0006470 protein dephosphorylation Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006935 chemotaxis Biological Process
GO:0007097 nuclear migration Biological Process
GO:0007281 germ cell development Biological Process
GO:0009846 pollen germination Biological Process
GO:0016055 Wnt signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031023 microtubule organizing center organization Biological Process
KEGG gene cross-reference
ath:AT2G26490
ddi:DDB_G0290687
mmu:103583
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.562
Rank 1 · TkA08G319570 · TK1151
Cytoplasm0.309
Rank 2 · TkA08G319570 · TK1151
Cell membrane0.128
Rank 3 · TkA08G319570 · TK1151
Lysosome / Vacuole0.052
Rank 4 · TkA08G319570 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA08G319570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24017Beta-prop_SCAP47-241 aa
PF25047Beta-prop_TEP1_2nd51-88 aa
PF25171Beta-prop_WDR36-Utp21_1st51-133 aa
PF25172Beta-prop_WDR3_2nd52-91 aa
PF25173Beta-prop_WDR3_1st54-132 aa
PF24796WDR5554-89 aa
PF00400WD4055-88 aa
PF23381Beta-prop_IFT122_1st55-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G319570PF24017Beta-prop_SCAP472413.8e-0936.6
TkA08G319570PF25047Beta-prop_TEP1_2nd51883.7e-1969.6
TkA08G319570PF25171Beta-prop_WDR36-Utp21_1st511335e-1143.2
TkA08G319570PF25172Beta-prop_WDR3_2nd52918.9e-2278.4
TkA08G319570PF25173Beta-prop_WDR3_1st541326.4e-2588.6
TkA08G319570PF24796WDR5554891.3e-1144.9
TkA08G319570PF00400WD4055882.9e-32110.4
TkA08G319570PF23381Beta-prop_IFT122_1st551362.8e-2280.1
TkA08G319570PF25047Beta-prop_TEP1_2nd581303.7e-1969.6
TkA08G319570PF25175Beta-prop_WDR5592431.1e-2694.5
TkA08G319570PF24805EIF3I591323.7e-0833.6
TkA08G319570PF30361TRM82_WD601010.2111.1
TkA08G319570PF25048Beta-prop_TEP1_C621078.8e-2174.4
TkA08G319570PF20426NBCH_WD40641312.1e-0627.6
TkA08G319570PF24814WD40_Prp19651347.7e-2381.7
TkA08G319570PF24817WD40_WDHD1_1st65891.5e-1351.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48716Arabidopsis thalianasp|O48716|JGB_ARATH Protein JINGUBANG30.500%Swiss-ProtMedium

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