Gene Card
Gene overview
cDNA / CDS / Protein Sequences
432 bp · TkA08G273540|TK1151|cDNA
AGAGACCACCCGAGAGAGAGACCACCCGGAAGAGAAGCCGGACCTGGGCAGGGCTCGCATCGGAAGGCGGTGATCGACACAGCAACTGCTCCGATTCAACTTCGATCCGTCTCAGCACCACCGCTTCCCCACGTACGTCCATCCATCGACGACCTCCTCCATCTTCGCATCCCATCTCTTTCACGGCGTCACCCACCAGGCCACCAACATCAGCGCTTCCTCCTGCAGCGACGTCCTCCAATAGGTATAGATTTTGCTTT...
432 bp · TkA08G273540|TK1151|CDS
AGAGACCACCCGAGAGAGAGACCACCCGGAAGAGAAGCCGGACCTGGGCAGGGCTCGCATCGGAAGGCGGTGATCGACACAGCAACTGCTCCGATTCAACTTCGATCCGTCTCAGCACCACCGCTTCCCCACGTACGTCCATCCATCGACGACCTCCTCCATCTTCGCATCCCATCTCTTTCACGGCGTCACCCACCAGGCCACCAACATCAGCGCTTCCTCCTGCAGCGACGTCCTCCAATAGGTATAGATTTTGCTTT...
Protein
Download Protein FASTA143 aa · TkA08G273540|TK1151|PROTEIN
RDHPRERPPGREAGPGQGSHRKAVIDTATAPIQLRSVSAPPLPHVRPSIDDLLHLRIPSLSRRHPPGHQHQRFLLQRRPPIGIDFAFEIDFATCQFEIDFASSEFEIDFATCEPEHYYLNLKSVFLPVNLLTSQIGIDFASRN
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G273540 |
|---|---|
| TK1151 ID | TkA08G273540 |
| OH-1004 ID | LXL04_033550 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 95.804 / OH-1004 53.101Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G273540 |
|---|---|
| Location | Chr08:71228651-71229082 (-) |
| Description | Similar to RPL18AA: 60S ribosomal protein L18a-1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0006412 translation Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0009860 pollen tube growth Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0009506 plasmodesma Cellular Component GO:0022625 cytosolic large ribosomal subunit Cellular Component |
| KEGG gene cross-reference | ath:AT1G29965 ath:AT2G34480 ath:AT3G14600 dosa:Os01g0752300 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.