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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G270350
Reference: TK1151 Chr: Chr08 Coordinates: 70445011-70448291 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2024 bp · TkA08G270350|TK1151|cDNA

TTTTTTACCTTACCATGTACATGTAGTCATGTACCGTCTGTGACTCCAACTTCCAATTGTGAGAGTACCAAGTACCAGACCTTCAACGTGGAAGTGAAACCACCACATCCACATCCAAATCCACCTTCTTCTTCTTCCTCCAGCTCTTCTTGCCGTCTCTTCTCTCTACCGATTGTACAAATGGCATATCTAAATGCCGCTGCCGCCGCCTCCCTATCTGCTTCAGCAGTCCTCGCTCCTCTCAACCGTACATTTGTTCA...

CDS

Download CDS FASTA

1767 bp · TkA08G270350|TK1151|CDS

TTTTTTACCTTACCATGTACATGTAGTCATGTACCGTCTGTGACTCCAACTTCCAATTGTGAGAGTACCAAGTACCAGACCTTCAACGTGGAAGTGAAACCACCACATCCACATCCAAATCCACCTTCTTCTTCTTCCTCCAGCTCTTCTTGCCGTCTCTTCTCTCTACCGATTGTACAAATGGCATATCTAAATGCCGCTGCCGCCGCCTCCCTATCTGCTTCAGCAGTCCTCGCTCCTCTCAACCGTACATTTGTTCA...

Protein

Download Protein FASTA

588 aa · TkA08G270350|TK1151|PROTEIN

FFTLPCTCSHVPSVTPTSNCESTKYQTFNVEVKPPHPHPNPPSSSSSSSSCRLFSLPIVQMAYLNAAAAASLSASAVLAPLNRTFVHWGKLFQGSSCVKFHSNSLFFGSTPRSRQLRLVSSAMDGKNLRSNELSQEEAMKSYSWPDKKRPRVCILGGGFGGLYTALRLDSLTWPDDKKPQVILVDQSERFVFKPMLYELLTGEVDAWEIAPRFSDLLVNTAVQFVKDRVKVLSPCDHVGMNGQAVSGHGGSVQLESGVVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G270350
TK1151 IDTkA08G270350
OH-1004 IDLXL04_033524
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.100
Protein coverage (%)TK1151 98.639 / OH-1004 76.416
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G270350
LocationChr08:70445011-70448291 (-)
DescriptionSimilar to NDC1: Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g08740 Bifunctional oxidoreductase ables to act both on prenyl naphthoquinones and on prenyl benzoquinones.
Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light.2003 · DOI: 10.1104/pp.103.024208
A Dedicated Type II NADPH Dehydrogenase Performs the Penultimate Step in the Biosynthesis of Vitamin K1 in Synechocystis and Arabidopsis.2015 · DOI: 10.1105/tpc.15.00103

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0019646 aerobic electron transport chain Biological Process
GO:0042372 phylloquinone biosynthetic process Biological Process
GO:0071482 cellular response to light stimulus Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0010287 plastoglobule Cellular Component
GO:0003955 NAD(P)H dehydrogenase (quinone) activity Molecular Function
GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function
KEGG gene cross-reference
ath:AT5G08740
bsu:BSU32100
hin:HI_0747
ssp:SSP1834
syn:slr1743
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.974
Rank 1 · TkA08G270350 · TK1151
Mitochondrion0.041
Rank 2 · TkA08G270350 · TK1151
Cytoplasm0.022
Rank 3 · TkA08G270350 · TK1151
Nucleus0.019
Rank 4 · TkA08G270350 · TK1151
Cell membrane0.014
Rank 5 · TkA08G270350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992Pyr_redox_2151-488 aa
PF00070Pyr_redox151-169 aa
PF01266DAO151-187 aa
PF13454NAD_binding_9154-189 aa
PF13450NAD_binding_8154-188 aa
PF13454NAD_binding_9248-270 aa
PF13434Lys_Orn_oxgnase265-352 aa
PF04430DUF498279-343 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G270350PF07992Pyr_redox_21514886.3e-36125.0
TkA08G270350PF00070Pyr_redox1511699e-0626.8
TkA08G270350PF01266DAO1511870.1112.8
TkA08G270350PF13454NAD_binding_91541890.02415.3
TkA08G270350PF13450NAD_binding_81541880.1413.2
TkA08G270350PF13454NAD_binding_92482700.02415.3
TkA08G270350PF13434Lys_Orn_oxgnase2653520.02114.7
TkA08G270350PF04430DUF4982793430.2911.9
TkA08G270350PF13660DUF41472803450.1712.0
TkA08G270350PF00070Pyr_redox3163989e-0626.8
TkA08G270350PF01266DAO3163360.1112.8
TkA08G270350PF13454NAD_binding_93183390.02415.3
TkA08G270350PF13450NAD_binding_83193360.1413.2
TkA08G270350PF13434Lys_Orn_oxgnase3794290.02114.7
TkA08G270350PF04430DUF4983934080.2911.9
TkA08G270350PF13450NAD_binding_85555690.1413.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GXR9Arabidopsis thalianasp|Q8GXR9|NDC1_ARATH Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial73.100%Swiss-ProtHigh

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