TkA08G270320 | RubberDandelionOmics

Gene overview

TkA08G270320

Reference: TK1151 Chr: Chr08 Coordinates: 70425425-70430122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2930 bp · TkA08G270320|TK1151|cDNA

TTTCATCTCATTTCCAGTGTCGACCCCAGTGCTAGCCTGCTAGGACTAGGGTTTGTACAACCCCATCAGTCATCCGTTGTTTTCACTTGAACATGAGCCACCTCCTAAATTGCCAAAACCGCAGATACCAATTTGATTGTTCTGATTCTCAACAACTAATTCCGTCTGATTCCCAATACGACCTCCTCTATTTGCACTCCCTGTCCCGCGATTTGCTCCGCCTCTGTAACCTCGTCCTACACAGCTTCCGCTTCTTTCTT...

CDS

Download CDS FASTA

1830 bp · TkA08G270320|TK1151|CDS

ATGTCTTCTTCAGGGGAAAACCTAGAAAAGTATCAAATTCCACTAGAGGAGATCATTAGGGCCACAAAAAACTTCAGTTTAGAAACTCGAATAGGTTCTGGTGGATTTGGTATGGTCTACAAAGGACAACTCTCTGAACAATGGCAAAACCTCACAGTAGCCATCAAACGCCTTGACAAAAATGGTTATCAGGGAAAAAACGAGTTCATTAATGAACTCAAGATGGTTTCTAGCTTCCAACATCCAAACATCATCACGTT...

Protein

Download Protein FASTA

609 aa · TkA08G270320|TK1151|PROTEIN

MSSSGENLEKYQIPLEEIIRATKNFSLETRIGSGGFGMVYKGQLSEQWQNLTVAIKRLDKNGYQGKNEFINELKMVSSFQHPNIITFIGYCDDGNEMIIVYEYAINRSLDMHLHDPNKRGRITWAQRLMICLGAARGLKYLHSGLGEDMRVIHRDVKSANILLNETLQAKLCDFGLSRFGPRNQPRTQLITRASGTRFYMDPIYNERGRLAKESDIYSFGVVLFEMSSGMLAYHGRCYGGGKEQYYLLDLVRSYYDDHEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G270320`
TK1151 ID	TkA08G270320
OH-1004 ID	LXL04_033521
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.700
Protein coverage (%)	TK1151 91.954 / OH-1004 97.531 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G270320

Location Chr08:70425425-70430122 (+)

Description Similar to ALPHAC-AD: AP-2 complex subunit alpha-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22780`	Subunit of the adaptor protein complex 2 (AP-2).	Identification and functional characterization of Arabidopsis AP180, a binding partner of plant alphaC-adaptin.2004 · DOI: 10.1242/jcs.01062
`At5g22770`	Subunit of the adaptor protein complex 2 (AP-2).	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At2g28590`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033521 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0051924 regulation of calcium ion transport Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0080147 root hair cell development Biological Process

GO:0097275 intracellular ammonium homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G22770

ath:AT5G22780

ath:AT5G39000

ath:AT5G59700

ath:AT5G61350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.521

Rank 1 · TkA08G270320 · TK1151

Cell membrane0.278

Rank 2 · TkA08G270320 · TK1151

Nucleus0.239

Rank 3 · TkA08G270320 · TK1151

Golgi apparatus0.111

Rank 4 · TkA08G270320 · TK1151

Lysosome / Vacuole0.087

Rank 5 · TkA08G270320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-305 aa

PF07714PK_Tyr_Ser-Thr27-307 aa

PF03109ABC130-59 aa

PF03109ABC1150-181 aa

PF12330Haspin_kinase153-180 aa

PF12330Haspin_kinase274-292 aa

PF02883Alpha_adaptinC2372-462 aa

PF02296Alpha_adaptin_C480-596 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G270320	`PF00069`	Pkinase	26	305	1.8e-43	149.5
TkA08G270320	`PF07714`	PK_Tyr_Ser-Thr	27	307	9.9e-45	153.6
TkA08G270320	`PF03109`	ABC1	30	59	0.11	12.4
TkA08G270320	`PF03109`	ABC1	150	181	0.11	12.4
TkA08G270320	`PF12330`	Haspin_kinase	153	180	0.032	14.0
TkA08G270320	`PF12330`	Haspin_kinase	274	292	0.032	14.0
TkA08G270320	`PF02883`	Alpha_adaptinC2	372	462	1.5e-08	35.6
TkA08G270320	`PF02296`	Alpha_adaptin_C	480	596	4.5e-15	56.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPK4`	Arabidopsis thaliana	sp\|Q8LPK4\|AP2A2_ARATH AP-2 complex subunit alpha-2	65.100%	Swiss-Prot	Low
`Q8LPL6`	Arabidopsis thaliana	sp\|Q8LPL6\|AP2A1_ARATH AP-2 complex subunit alpha-1	64.300%	Swiss-Prot	Low
`Q9FN92`	Arabidopsis thaliana	sp\|Q9FN92\|Y5597_ARATH Probable receptor-like protein kinase At5g59700	40.300%	Swiss-Prot	Medium
`Q9LX66`	Arabidopsis thaliana	sp\|Q9LX66\|HERK_ARATH Receptor-like protein kinase HERK 1	39.700%	Swiss-Prot	Medium
`Q9SIB6`	Arabidopsis thaliana	sp\|Q9SIB6\|PBL6_ARATH Probable serine/threonine-protein kinase PBL6	39.500%	Swiss-Prot	Low

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