LXL04_033521 | RubberDandelionOmics

Gene overview

LXL04_033521

Reference: OH-1004 Chr: Chr07 Coordinates: 46122526-46125259 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1801 bp · LXL04_033521|LXL04_033521|OH1004|cDNA

atgcCTTCTTCAGGGGAAAACCTAGAAAGTTATCAAATTCCACTAGAGGAGATCATTAGGGCCACAAAAAACTTCAGTTTAGAAACTCAAATAGGTTATGGTGGATTTGGTATGGTCTTCAAAGGACAACTCTCTGAACAATGGCAAAACCTCCATCAAACGCCTCGACAAAAATGGTTATCAGGGAAAGAATGAGTTTGTTAATGAACTCAAGATGGTTTTTAGTTTCCAACATCCAAACATCATGACGTTCATTGGTT...

CDS

Download CDS FASTA

1704 bp · LXL04_033521|LXL04_033521|OH1004|CDS

ATGGTGGATTTGGTATGGTCTTCAAAGGACAACTCTCTGAACAATGGCAAAACCTCCATCAAACGCCTCGACAAAAATGGTTATCAGGGAAAGAATGAGTTTGTTAATGAACTCAAGATGGTTTTTAGTTTCCAACATCCAAACATCATGACGTTCATTGGTTATTGTGATGATGGCAAAGAGATGATCAGAGTGTATGAGTATGCAATCAATCGAAGCCTCGATATGCATCTCCAAGATCCGAATCAGCGGGGTCGAAT...

Protein

Download Protein FASTA

567 aa · LXL04_033521|LXL04_033521|OH1004|PROTEIN

MVDLVWSSKDNSLNNGKTSIKRLDKNGYQGKNEFVNELKMVFSFQHPNIMTFIGYCDDGKEMIRVYEYAINRSLDMHLQDPNQRGRITWSQRLMICLGAARGLKYLHSGLGEDMRVIHRDVKSANILLNETLQAKLCDFGLSRFGPRNQPHTQLITRASGTRFYMDPIYNERGRLAKESDVYSFGVVLFEMSSGMLAYHARCCGDGKEHYLLDLVRSYYDDHEVDELEKLIDPVMRDDVNMRSFHTFNKIAHQCINFDSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033521`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033521

Location Chr07:46122526-46125259 (+)

Description Similar to ALPHAC-AD: AP-2 complex subunit alpha-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22780`	Subunit of the adaptor protein complex 2 (AP-2).	Identification and functional characterization of Arabidopsis AP180, a binding partner of plant alphaC-adaptin.2004 · DOI: 10.1242/jcs.01062
`At5g22770`	Subunit of the adaptor protein complex 2 (AP-2).	No verified direct reference in this release
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At5g61350`	Probable receptor-like protein kinase At5g61350.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033521 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0051924 regulation of calcium ion transport Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0080147 root hair cell development Biological Process

GO:0097275 intracellular ammonium homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT5G22770

ath:AT5G22780

ath:AT5G39000

ath:AT5G59700

ath:AT5G61350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509

Rank 1 · LXL04_033521 · OH-1004

Nucleus0.243

Rank 2 · LXL04_033521 · OH-1004

Cell membrane0.232

Rank 3 · LXL04_033521 · OH-1004

Golgi apparatus0.125

Rank 4 · LXL04_033521 · OH-1004

Endoplasmic reticulum0.101

Rank 5 · LXL04_033521 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr11-271 aa

PF00069.32Pkinase14-269 aa

PF02883.27Alpha_adaptinC2330-420 aa

PF02296.23Alpha_adaptin_C438-554 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033521	`PF07714.24`	PK_Tyr_Ser-Thr	11	271	2.9e-36	125.8
LXL04_033521	`PF00069.32`	Pkinase	14	269	9.6e-36	124.2
LXL04_033521	`PF02883.27`	Alpha_adaptinC2	330	420	6.1e-08	33.6
LXL04_033521	`PF02296.23`	Alpha_adaptin_C	438	554	4.5e-15	56.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPK4`	Arabidopsis thaliana	AP-2 complex subunit alpha-2	63.137%	Swiss-Prot	weak database homology
`Q8LPL6`	Arabidopsis thaliana	AP-2 complex subunit alpha-1	59.636%	Swiss-Prot	weak database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	40.293%	Swiss-Prot	weak database homology
`Q9FLJ8`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g61350	37.248%	Swiss-Prot	moderate database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	36.957%	Swiss-Prot	weak database homology

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