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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G245980
Reference: TK1151 Chr: Chr08 Coordinates: 64303628-64318394 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1784 bp · TkA08G245980|TK1151|cDNA

TTCCATCTGTATCGTGATCATTAAAAGGAGCGGCCGTTCGATTCTAATCATAAACACCTTCAATTTCAGCTCCTCTTTTTTTGCCTCATTGTTAGCTCTTGCACACTGATGCTTCGGTATATAACAAAACGATGTGCACATGAACTGATGACCGTATCGGAACACATTCCAATCACAGCATCTCAATTGCAGCTCATCTGATCATCATTATCCATTTGAATCTGTCTGATCATCGAATTGGAGATCGAATACATTGTACT...

CDS

Download CDS FASTA

744 bp · TkA08G245980|TK1151|CDS

ATGATCCTATCAGAAAGATGTTTTGCGATTGTAGATGGAACTGGAAGCAAGAAAGGGCGGTCTAAACCACCCCTCGAGATTGAAAAGCTGGCTGAAATCATTGAAGATTTCAAGATGGTTTTGGTTGTAAGAAATGACTTAAAGATGGGGAAAGGGAAGATTGCTACCCAATGCAGTCACGCAACTTTAGGAATCTATAAAAAGATTCTTCATTGGGCACCTAAAGCTTTAAACAGGTGGGAGATGTGTGGGCAGGTTAA...

Protein

Download Protein FASTA

247 aa · TkA08G245980|TK1151|PROTEIN

MILSERCFAIVDGTGSKKGRSKPPLEIEKLAEIIEDFKMVLVVRNDLKMGKGKIATQCSHATLGIYKKILHWAPKALNRWEMCGQVKVVVKIESEDDMLVLQVLREFNHVNPQDDEEGKEFANTRNLLTLNVAACYLKMGDCRKSIETCNKVLDANPVHVKALYRRGMAYMEVGDYEEARTDFNKMMTIDKSSEVNAKSALLKLKQTEQEVEKKARKQFKGLFDEKPVEIAEVGVTDTVTESKNEGA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G245980
TK1151 IDTkA08G245980
OH-1004 IDLXL04_016137
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)85.400
Protein coverage (%)TK1151 96.761 / OH-1004 62.974
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G245980
LocationChr08:64303628-64318394 (-)
DescriptionSimilar to PAS1: Peptidyl-prolyl cis-trans isomerase PASTICCINO1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54010 PPIases accelerate the folding of proteins.
Very-long-chain fatty acids are involved in polar auxin transport and developmental patterning in Arabidopsis.2010 · DOI: 10.1105/tpc.109.071209
The PASTICCINO genes of Arabidopsis thaliana are involved in the control of cell division and differentiation.1998 · DOI: 10.1242/dev.125.5.909
Mutation in the Arabidopsis PASTICCINO1 gene, which encodes a new FK506-binding protein-like protein, has a dramatic effect on plant development.1998 · DOI: 10.1128/mcb.18.5.3034

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016137 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009880 embryonic pattern specification Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0030010 establishment of cell polarity Biological Process
GO:0030154 cell differentiation Biological Process
GO:0042761 very long-chain fatty acid biosynthetic process Biological Process
GO:0048364 root development Biological Process
KEGG gene cross-reference
ath:AT3G54010
bta:516595
dme:Dmel_CG1307
hsa:51651
mmu:217057
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513
Rank 1 · TkA08G245980 · TK1151
Nucleus0.368
Rank 2 · TkA08G245980 · TK1151
Mitochondrion0.127
Rank 3 · TkA08G245980 · TK1151
Cell membrane0.066
Rank 4 · TkA08G245980 · TK1151
Endoplasmic reticulum0.059
Rank 5 · TkA08G245980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12320SbcD_C26-42 aa
PF01981PTH237-102 aa
PF13374TPR_1049-70 aa
PF13371TPR_957-80 aa
PF25063ARM_TT21_C57-86 aa
PF23914TPR_CcmH_CycH69-90 aa
PF16918PknG_TPR92-189 aa
PF12569NatA_aux_su105-212 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G245980PF12320SbcD_C26420.01816.0
TkA08G245980PF01981PTH2371025.7e-2382.0
TkA08G245980PF13374TPR_1049700.06913.9
TkA08G245980PF13371TPR_957801.4e-0629.0
TkA08G245980PF25063ARM_TT21_C57860.04114.5
TkA08G245980PF23914TPR_CcmH_CycH69900.01815.6
TkA08G245980PF16918PknG_TPR921890.02114.3
TkA08G245980PF12569NatA_aux_su1052120.003717.0
TkA08G245980PF25058ARM_TT211191700.04814.3
TkA08G245980PF12895ANAPC31261810.0001422.9
TkA08G245980PF25063ARM_TT21_C1282050.04114.5
TkA08G245980PF13424TPR_121291541.2e-0629.4
TkA08G245980PF10602RPN71291540.03914.4
TkA08G245980PF21033RMD1-31291580.0713.0
TkA08G245980PF14559TPR_191301640.001519.5
TkA08G245980PF00515TPR_11311571.8e-1144.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7DMA9Arabidopsis thalianasp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO163.900%Swiss-ProtMedium

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