TkA08G229580 | RubberDandelionOmics

Gene overview

TkA08G229580

Reference: TK1151 Chr: Chr08 Coordinates: 59841225-59842911 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1299 bp · TkA08G229580|TK1151|cDNA

TTTCAACCGTAAAACAAATAGGGTCATTGTTTTGCCGTATAAAAGAGACGTGGCCCATTCAACAAGGTCAATCAATAATCATCATCACAAGCTAAAAATAAAAAAGAGGATTTACTCTCCTGATTTGTCGAGATTGAGGGAAGAACTCCAGCATTCATCCTCTTCTGTATGATCTTCTTCTCCATTTCCATCAAACAGCACTAGCAGTATCCTTATCAGCTTTACATATTTCACAAGATGTCTGGCCAGAGCCAGCGTTT...

CDS

Download CDS FASTA

783 bp · TkA08G229580|TK1151|CDS

ATGTCTGGCCAGAGCCAGCGTTTGAACGTTGTCCCAACAGTCACCGTCCTTGGAGTTGTCAAAGCTCGTCTCATTGGTGCAACCAGAGGCCACGCTCTTCTCAAGAAAAAAAGCGATGCTCTAACAGTCCAATTCCGAGCCATCCTCAAAAAAATCGTCTCCACAAAAGAATCAATGGGAGAAGTAATGAAAACCTCCTCCTTTGCTCTAACAGAAGCCAAATACGTTGCAGGAGAAAACATCAAATTCACAGTCATAGA...

Protein

Download Protein FASTA

260 aa · TkA08G229580|TK1151|PROTEIN

MSGQSQRLNVVPTVTVLGVVKARLIGATRGHALLKKKSDALTVQFRAILKKIVSTKESMGEVMKTSSFALTEAKYVAGENIKFTVIENVKTASLRVKSRTENIAGVKLPKFDYFTESETKNELTGLARGGQQVQGCKVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALESVVKPRLENTITYIKGELDELEREDFFRLKKIQGFKKREVENKRKAALEFRELQAAEHLSLEKGIPITAAHDMLAVGQKDEDIIF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G229580`
TK1151 ID	TkA08G229580
OH-1004 ID	LXL04_033088
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 96.538 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G229580

Location Chr08:59841225-59842911 (-)

Description Similar to VHA-D: V-type proton ATPase subunit D

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58730`	Subunit of the peripheral V1 complex of vacuolar ATPase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007035 vacuolar acidification Biological Process

GO:0007042 lysosomal lumen acidification Biological Process

GO:0016241 regulation of macroautophagy Biological Process

GO:0048388 endosomal lumen acidification Biological Process

GO:0051452 intracellular pH reduction Biological Process

GO:0060271 cilium assembly Biological Process

GO:0061512 protein localization to cilium Biological Process

GO:0061795 Golgi lumen acidification Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component

GO:0000325 plant-type vacuole Cellular Component

KEGG gene cross-reference

ath:AT3G58730

cal:CAALFM_C406400CA

hsa:51382

ocu:100009221

pon:100172107

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.625

Rank 1 · TkA08G229580 · TK1151

Cell membrane0.187

Rank 2 · TkA08G229580 · TK1151

Lysosome / Vacuole0.137

Rank 3 · TkA08G229580 · TK1151

Nucleus0.135

Rank 4 · TkA08G229580 · TK1151

Golgi apparatus0.115

Rank 5 · TkA08G229580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01813ATP-synt_D18-208 aa

PF02996Prefoldin32-59 aa

PF02996Prefoldin143-198 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G229580	`PF01813`	ATP-synt_D	18	208	1.9e-66	224.3
TkA08G229580	`PF02996`	Prefoldin	32	59	0.091	13.4
TkA08G229580	`PF02996`	Prefoldin	143	198	0.091	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XGM1`	Arabidopsis thaliana	sp\|Q9XGM1\|VATD_ARATH V-type proton ATPase subunit D	77.400%	Swiss-Prot	High

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