TkA08G229500 | RubberDandelionOmics

Gene overview

TkA08G229500

Reference: TK1151 Chr: Chr08 Coordinates: 59807985-59812949 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2111 bp · TkA08G229500|TK1151|cDNA

GAAAAATTCAACTTTTTGACTCCTCACTTTCATCACATTTCCCACCTCCAAATCCTTATAAATTTTTTTCAAACACCAAACATTAACACAAAGATTTATCATCAATCTAATCGTATACCTCTCCCCCTACTTCAATTTTAATTCTTGCTGTATTTTGGTACGTATAACGTAGACGAAATCAATGGCCGGAGGAACTGGCGGCAGGTCTTTAGAGCAAACGCCGACATGGGCGGTCGCCACCGTCTGTTTCGTGCTAATTC...

CDS

Download CDS FASTA

1761 bp · TkA08G229500|TK1151|CDS

ATGGCCGGAGGAACTGGCGGCAGGTCTTTAGAGCAAACGCCGACATGGGCGGTCGCCACCGTCTGTTTCGTGCTAATTCTCATATCCATTTTTATCGAACAAATCATACATGTTATCGGACATTGGTTCAAGAAGAAGCGAAAGAAAGCTTTGTACGAATCTCTGGAAAAAATTAAAGCAGAGCTGATGTTGTTGGGGTTCATATCGTTGCTGTTAACGGCGGGGACGTCACCAATTACGAAGATATGTATATCGGAGGG...

Protein

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586 aa · TkA08G229500|TK1151|PROTEIN

MAGGTGGRSLEQTPTWAVATVCFVLILISIFIEQIIHVIGHWFKKKRKKALYESLEKIKAELMLLGFISLLLTAGTSPITKICISEGAANSWHPCTREEEESAGSGGESRRRLLTWSKMGDSARRILAGSGGDDKCAEKGKVSFMSYDGVHQLHIFIFALALFHVIYCILTMALGQAKMRRWKHWEKETRTVEYQFSHDPERFRFARDTSFGRRHLNFWSKSPILLWIVCFFRQFFRSVPKVDYLTLRHGFIMAHLAPQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G229500`
TK1151 ID	TkA08G229500
OH-1004 ID	LXL04_004963
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	65.100
Protein coverage (%)	TK1151 80.717 / OH-1004 85.662 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G229500

Location Chr08:59807985-59812949 (-)

Description Similar to MLO6: MLO-like protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61560`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At1g11310`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`At2g39200`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0486300`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release
`UniProt: A2YD22`	May be involved in modulation of pathogen defense and leaf cell death.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004963 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G11310

ath:AT1G61560

ath:AT2G17480

ath:AT2G33670

ath:AT2G39200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.838

Rank 1 · TkA08G229500 · TK1151

Cytoplasm0.101

Rank 2 · TkA08G229500 · TK1151

Endoplasmic reticulum0.096

Rank 3 · TkA08G229500 · TK1151

Lysosome / Vacuole0.051

Rank 4 · TkA08G229500 · TK1151

Golgi apparatus0.042

Rank 5 · TkA08G229500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03094Mlo7-489 aa

PF28839F59B103_C16-54 aa

PF20794bPH_718-34 aa

PF28839F59B103_C159-172 aa

PF20794bPH_7290-337 aa

PF20794bPH_7422-460 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G229500	`PF03094`	Mlo	7	489	1.9e-248	825.4
TkA08G229500	`PF28839`	F59B103_C	16	54	9.9	6.6
TkA08G229500	`PF20794`	bPH_7	18	34	1.5	9.2
TkA08G229500	`PF28839`	F59B103_C	159	172	9.9	6.6
TkA08G229500	`PF20794`	bPH_7	290	337	1.5	9.2
TkA08G229500	`PF20794`	bPH_7	422	460	1.5	9.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94KB7`	Arabidopsis thaliana	sp\|Q94KB7\|MLO6_ARATH MLO-like protein 6	62.100%	Swiss-Prot	High
`Q9SXB6`	Arabidopsis thaliana	sp\|Q9SXB6\|MLO2_ARATH MLO-like protein 2	62.500%	Swiss-Prot	High
`O80961`	Arabidopsis thaliana	sp\|O80961\|MLO12_ARATH MLO-like protein 12	65.500%	Swiss-Prot	High
`Q0DC45`	Oryza sativa subsp. japonica	sp\|Q0DC45\|MLOH1_ORYSJ MLO protein homolog 1	52.200%	Swiss-Prot	High
`A2YD22`	Oryza sativa subsp. indica	sp\|A2YD22\|MLOH1_ORYSI MLO protein homolog 1	52.300%	Swiss-Prot	High

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