TkA08G209790 | RubberDandelionOmics

Gene overview

TkA08G209790

Reference: TK1151 Chr: Chr08 Coordinates: 54836055-54839534 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1580 bp · TkA08G209790|TK1151|cDNA

ATAAAATCCACAGGACTATTTAGCGCCAACAATAATCATATAACCGACTTTCCTATAGATTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGCCTGGGTTTAGGGTTTCCTTGGAGGTGTTCGATTGATTTCGATCGAATTCATTAGAGAGAAGATGTCTCAAAATGGTAAATTGATGCCCAATCTGGACCAAAACAGTACAAAAATCCTTAATCTTACTGTACTTCAGAGAATGGATCCTTACATTGAGGAG...

CDS

Download CDS FASTA

1128 bp · TkA08G209790|TK1151|CDS

ATGTCTCAAAATGGTAAATTGATGCCCAATCTGGACCAAAACAGTACAAAAATCCTTAATCTTACTGTACTTCAGAGAATGGATCCTTACATTGAGGAGATCTTAATCACCGCCGCTCATGTTACCTTCTACGAATTCAACGTTGACCTCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTGGTTAAAAGGAACACACAGCCAAGGTTTCAATTTATAGTAATGAATCGGCGAAATACAGAAAACCTAGT...

Protein

Download Protein FASTA

375 aa · TkA08G209790|TK1151|PROTEIN

MSQNGKLMPNLDQNSTKILNLTVLQRMDPYIEEILITAAHVTFYEFNVDLNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVEDLLGDFEYELQVPYLLYRNAAQEVNGIWFYNPRECEDVANLFTRILGAYSKVPLKPKVNKSEFEELEAVPTSSVIEGPLEPTFTTSTSTDVPEDSSICFFGTAMNLGHHPSNSVSSIPPYNNSTSIPLHSRVASSPALNHTPLQMPSFSSSNPGIGIGIGMGMGMGMPVHEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G209790`
TK1151 ID	TkA08G209790
OH-1004 ID	LXL04_032858
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.300
Protein coverage (%)	TK1151 95.200 / OH-1004 99.716 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G209790

Location Chr08:54836055-54839534 (-)

Description Similar to At1g08370: mRNA-decapping enzyme-like protein

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08370`	As a component of the decapping complex, involved in the degradation of mRNAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032858 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process

GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Biological Process

GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006952 defense response Biological Process

GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA Biological Process

GO:0034504 protein localization to nucleus Biological Process

GO:0097398 cellular response to interleukin-17 Biological Process

GO:0110012 protein localization to P-body Biological Process

GO:0000932 P-body Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G08370

bta:514548

hsa:196513

pon:100174754

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.690

Rank 1 · TkA08G209790 · TK1151

Nucleus0.247

Rank 2 · TkA08G209790 · TK1151

Cell membrane0.153

Rank 3 · TkA08G209790 · TK1151

Golgi apparatus0.108

Rank 4 · TkA08G209790 · TK1151

Lysosome / Vacuole0.090

Rank 5 · TkA08G209790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06058DCP119-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G209790	`PF06058`	DCP1	19	131	3.3e-46	156.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJF3`	Arabidopsis thaliana	sp\|Q9SJF3\|DCP1_ARATH mRNA-decapping enzyme-like protein	54.800%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card