LXL04_032858 | RubberDandelionOmics

Gene overview

LXL04_032858

Reference: OH-1004 Chr: Chr07 Coordinates: 30628744-30631004 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1085 bp · LXL04_032858|LXL04_032858|OH1004|cDNA

ATGTCTCAAAATGGTAAATTGATGCCCAATCTGGACCAAAACAGTACAAAAATCCTTAATCTTACTGTACTTCAGAGAATGGATCCTTACATTGAGGAGATCTTAATCACCGCCGCTCATGTTACCTTCTACGAATTCAACGTTGACCTCAATCAATGGGTTTTCGAATGCAGTTCACGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTGGTTAAAAGAAAACCTAGTTGAAGATCTTTTAGGGGACTTTGAATATGA...

CDS

Download CDS FASTA

1059 bp · LXL04_032858|LXL04_032858|OH1004|CDS

ATGTCTCAAAATGGTAAATTGATGCCCAATCTGGACCAAAACAGTACAAAAATCCTTAATCTTACTGTACTTCAGAGAATGGATCCTTACATTGAGGAGATCTTAATCACCGCCGCTCATGTTACCTTCTACGAATTCAACGTTGACCTCAATCAATGGGTTTTCGAATGCAGTTCACGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTGGTTAAAAGAAAACCTAGTTGAAGATCTTTTAGGGGACTTTGAATATGA...

Protein

Download Protein FASTA

352 aa · LXL04_032858|LXL04_032858|OH1004|PROTEIN

MSQNGKLMPNLDQNSTKILNLTVLQRMDPYIEEILITAAHVTFYEFNVDLNQWVFECSSRVARMLKGLSLWLKENLVEDLLGDFEYELQVPYLLYRNAAQEVNGIWFYNPRECEDVANLFTRILGAYSKVPLKPKVNKSEFEELEAVPTSSVIEGPLEPTFTTSTSTDVPEDSSFANFFGTAMNLGHHPSNSVSSIPPYNNSTSIPLHSRVASSPALNHTPLQMPSFSSSNPGIGIGMGMGMGMGMGMAVHENQDQVNNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032858`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032858

Location Chr07:30628744-30631004 (-)

Description Similar to At1g08370: mRNA-decapping enzyme-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08370`	As a component of the decapping complex, involved in the degradation of mRNAs.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032858 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process

GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Biological Process

GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA Biological Process

GO:0006397 mRNA processing Biological Process

GO:0006952 defense response Biological Process

GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA Biological Process

GO:0034504 protein localization to nucleus Biological Process

GO:0097398 cellular response to interleukin-17 Biological Process

GO:0110012 protein localization to P-body Biological Process

GO:0000932 P-body Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G08370

bta:514548

hsa:196513

pon:100174754

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.706

Rank 1 · LXL04_032858 · OH-1004

Nucleus0.268

Rank 2 · LXL04_032858 · OH-1004

Golgi apparatus0.086

Rank 3 · LXL04_032858 · OH-1004

Cell membrane0.086

Rank 4 · LXL04_032858 · OH-1004

Lysosome / Vacuole0.081

Rank 5 · LXL04_032858 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06058.20DCP119-54 aa

PF06058.20DCP174-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032858	`PF06058.20`	DCP1	19	54	2.7e-24	86.1
LXL04_032858	`PF06058.20`	DCP1	74	121	2.7e-24	86.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJF3`	Arabidopsis thaliana	mRNA-decapping enzyme-like protein	47.425%	Swiss-Prot	moderate database homology

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