RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G205430
Reference: TK1151 Chr: Chr08 Coordinates: 53667959-53671031 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2514 bp · TkA08G205430|TK1151|cDNA

GCTAAAAGTTATAGTTAAGTACCAAATCCGTAATTCATATAACCACAAGGACCAAGTCTGTCGTTTACCTTAAAAAGAATTCACCTCGTTGAGTTGACACAGTTAACTCGTCCACTATCATTTCCCCCCATTTTCTCCATCACCATTTTCCAATTCTCTTTGATTTACATTTTCCCTAATTTCCACTCCTTTTACCGGCACTAATCATCTGCCAATTTCCATTTTCCTTCAGGGAATTAGGGTTTCTGATTGATACTAAC...

CDS

Download CDS FASTA

1758 bp · TkA08G205430|TK1151|CDS

ATGGGAAATAATTGCGTGCAGGGGCCCCAGCGTACTGGCTTTTTTTCATCTGTTACAGCAGCAGTCTGGAAAAACCGGCCACCGGCGAACTCTCTTCCCCCTCCCAATTCCAACGATCCGTCCACCCAAAACAAGAACAACAACAATGCCAACGACAAGAAACCAGATGATCCGAGTCACAAGGAATCTGAAAAACCACGAGATGTGCAAAGTACCCCGCCAGGTGCTGTTAAAATGTCAGAACAGGAGGCGGCTAAATC...

Protein

Download Protein FASTA

585 aa · TkA08G205430|TK1151|PROTEIN

MGNNCVQGPQRTGFFSSVTAAVWKNRPPANSLPPPNSNDPSTQNKNNNNANDKKPDDPSHKESEKPRDVQSTPPGAVKMSEQEAAKSGDKAKVTDDKARAQDKPKAATNFKRVQSMGLKDSVLQRRTGNMKEVYSMGKKLGQGQFGTTFLCTEKESGKEFACKSIAKRKLTTKEDVEDVRREIQIMHHLAGHPNVINIVGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTEKKAAELARIIVGVVESCHSLGVMHRDLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G205430
TK1151 IDTkA08G205430
OH-1004 IDLXL04_032800
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G205430
LocationChr08:53667959-53671031 (+)
DescriptionSimilar to CPK20: Calcium-dependent protein kinase 20
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g38910 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
At5g04870 May play a role in signal transduction pathways that involve calcium as a second messenger.
A calcium-dependent protein kinase can inhibit a calmodulin-stimulated Ca2+ pump (ACA2) located in the endoplasmic reticulum of Arabidopsis.2000 · DOI: 10.1073/pnas.97.11.6224

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0789000 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Os07g0161600 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Os03g0788500 May play a role in signal transduction pathways that involve calcium as a second messenger. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032800 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0043067 regulation of programmed cell death Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:1900055 regulation of leaf senescence Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005778 peroxisomal membrane Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G38910
ath:AT3G10660
ath:AT5G04870
dosa:Os03g0788500
dosa:Os03g0789000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.625
Rank 1 · TkA08G205430 · TK1151
Cytoplasm0.343
Rank 2 · TkA08G205430 · TK1151
Nucleus0.177
Rank 3 · TkA08G205430 · TK1151
Golgi apparatus0.083
Rank 4 · TkA08G205430 · TK1151
Endoplasmic reticulum0.067
Rank 5 · TkA08G205430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15912VIR_N13-93 aa
PF30130VID28_C41-128 aa
PF14531Kinase-like129-191 aa
PF00069Pkinase134-392 aa
PF07714PK_Tyr_Ser-Thr136-387 aa
PF01636APH147-221 aa
PF04558tRNA_synt_1c_R1152-177 aa
PF06293Kdo176-280 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G205430PF15912VIR_N13930.4610.6
TkA08G205430PF30130VID28_C411280.559.7
TkA08G205430PF14531Kinase-like1291914.9e-0626.7
TkA08G205430PF00069Pkinase1343925.3e-78262.8
TkA08G205430PF07714PK_Tyr_Ser-Thr1363871.1e-2694.4
TkA08G205430PF01636APH1472210.004117.6
TkA08G205430PF04558tRNA_synt_1c_R11521770.05814.1
TkA08G205430PF06293Kdo1762800.0007619.7
TkA08G205430PF14531Kinase-like2213804.9e-0626.7
TkA08G205430PF29176Allatotropin-like_C2372430.04114.2
TkA08G205430PF01636APH2522820.004117.6
TkA08G205430PF20742DUF5580_M4204990.007317.1
TkA08G205430PF13833EF-hand_84224613.4e-1865.8
TkA08G205430PF12763EH4325091.7e-0731.8
TkA08G205430PF25825SAPC2_N4325000.02415.2
TkA08G205430PF21008AIF-14345023e-0834.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV15Arabidopsis thalianasp|Q9ZV15|CDPKK_ARATH Calcium-dependent protein kinase 2070.800%Swiss-ProtHigh
Q06850Arabidopsis thalianasp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 160.400%Swiss-ProtHigh
Q852N6Oryza sativa subsp. japonicasp|Q852N6|CDPKB_ORYSJ Calcium-dependent protein kinase 1178.000%Swiss-ProtHigh
Q7XIM0Oryza sativa subsp. japonicasp|Q7XIM0|CDPKH_ORYSJ Calcium-dependent protein kinase 1766.300%Swiss-ProtHigh
Q6F3A6Oryza sativa subsp. japonicasp|Q6F3A6|CDPKA_ORYSJ Calcium-dependent protein kinase 1061.200%Swiss-ProtHigh

JBrowse

View in Genome Browser