TkA08G200260 | RubberDandelionOmics

Gene overview

TkA08G200260

Reference: TK1151 Chr: Chr08 Coordinates: 52273775-52276962 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1972 bp · TkA08G200260|TK1151|cDNA

AAATATCTCATTTCCTCGAAGAAGATCTTTTTTCCCCGTTCTTTTGCTTTTCTTCGATCGTTCGAAAACTCCACTTTCCTTTTACGGAAACTGTCTCGTTGATTCAATTTGACATAAATCATGGTTATACCAGTTTGATTAGTGTATATCGGCTCGAATCTAGCTCAGATGTCTTGTAAATTCATTTAATCTTCCGGAAGCTTTTACGGGTCTACTTATTGCTCAATGATTAGCTTTCCGACCTTTTTTACCATCAACAA...

CDS

Download CDS FASTA

1467 bp · TkA08G200260|TK1151|CDS

ATGACCAGTAATGGTGGCAGGGACGAAGGATTTCAAGTGGCGAGCCATGTGAAAGACGATTACATTCAAGATGTTAATGTAGTTGTAGGCAACAAACAAAGTTCACAACTATACAACGAGTTACAGGTCAGTAAAGTTGATGAGAATGTAAACAATGGAAGAGATCCGGTGGTGGTGGTGCACCGGAATATCATATCTCAACCACCACAACCACAGCAAGAGTCCCTGGCTCATTGGGAGAGATTTCTTCATGTTAAATC...

Protein

Download Protein FASTA

488 aa · TkA08G200260|TK1151|PROTEIN

MTSNGGRDEGFQVASHVKDDYIQDVNVVVGNKQSSQLYNELQVSKVDENVNNGRDPVVVVHRNIISQPPQPQQESLAHWERFLHVKSIKVMLVENDDSTRHIVTALLRNCNYEVIEASNGFQAWKILENLSNHIDIVLTEVVMPSFSGVGLLCKIMRHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLLKPIRKNELKNLWQHVWRRCHSSSGSGSESGTNGQKSVNSKRSDDIESTHDGSDDGSGTQSSWTKQAVEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G200260`
TK1151 ID	TkA08G200260
OH-1004 ID	LXL04_032710
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.900
Protein coverage (%)	TK1151 97.951 / OH-1004 93.967 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G200260

Location Chr08:52273775-52276962 (+)

Description Similar to APRR7: Two-component response regulator-like APRR7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02810`	Transcriptional repressor of CCA1 and LHY, and positive regulator of LWD1 and LWD2 expression.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043
`At5g60100`	Controls photoperiodic flowering response.	Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock.2000 · DOI: 10.1093/pcp/pcd043

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XFB7`	Controls photoperiodic flowering response.	No verified direct reference in this release
`Os03g0284100`	Controls photoperiodic flowering response.	No verified direct reference in this release
`UniProt: A2YQ93`	Controls photoperiodic flowering response.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032710 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000160 phosphorelay signal transduction system Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048511 rhythmic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G02810

dosa:Os03g0284100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.845

Rank 1 · TkA08G200260 · TK1151

Cytoplasm0.154

Rank 2 · TkA08G200260 · TK1151

Cell membrane0.104

Rank 3 · TkA08G200260 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA08G200260 · TK1151

Golgi apparatus0.017

Rank 5 · TkA08G200260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29701TP_0454_N88-173 aa

PF00072Response_reg90-201 aa

PF29701TP_0454_N384-405 aa

PF06203CCT452-473 aa

PF09425Jas_motif452-470 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G200260	`PF29701`	TP_0454_N	88	173	0.0034	17.9
TkA08G200260	`PF00072`	Response_reg	90	201	1.3e-21	77.6
TkA08G200260	`PF29701`	TP_0454_N	384	405	0.0034	17.9
TkA08G200260	`PF06203`	CCT	452	473	0.00031	21.4
TkA08G200260	`PF09425`	Jas_motif	452	470	0.026	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93WK5`	Arabidopsis thaliana	sp\|Q93WK5\|APRR7_ARATH Two-component response regulator-like APRR7	67.800%	Swiss-Prot	Low
`Q9LVG4`	Arabidopsis thaliana	sp\|Q9LVG4\|APRR3_ARATH Two-component response regulator-like APRR3	44.500%	Swiss-Prot	Medium
`A2XFB7`	Oryza sativa subsp. indica	sp\|A2XFB7\|PRR73_ORYSI Two-component response regulator-like PRR73	60.100%	Swiss-Prot	Low
`Q10N34`	Oryza sativa subsp. japonica	sp\|Q10N34\|PRR73_ORYSJ Two-component response regulator-like PRR73	61.800%	Swiss-Prot	Low
`A2YQ93`	Oryza sativa subsp. indica	sp\|A2YQ93\|PRR37_ORYSI Two-component response regulator-like PRR37	60.400%	Swiss-Prot	Low

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