TkA08G198730 | RubberDandelionOmics

Gene overview

TkA08G198730

Reference: TK1151 Chr: Chr08 Coordinates: 51854310-51855733 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · TkA08G198730|TK1151|cDNA

ATGATGATTGAATTGTGTCGATTCTCAAATCACAAGAAAGATACCGACTTTGAGTTCCTACTTGAAAGCTTTTCACGGTGCTATTGTGAAAGTTGTGCCGTTTATCTTGAAGGCATTGAGTTCCTAGCTATTGACAACCAGGTGCAACATGAAGAAAGTAACATCTTAAAGGAAGTCCAAGTCCCGAAGACAAAGTTCAACATGGACCAGTTGTTCTCGCAAAACATAGTGGACAAAAGGAAATGCAACATTGTTTCGGC...

CDS

Download CDS FASTA

738 bp · TkA08G198730|TK1151|CDS

ATGATGATTGAATTGTGTCGATTCTCAAATCACAAGAAAGATACCGACTTTGAGTTCCTACTTGAAAGCTTTTCACGGTGCTATTGTGAAAGTTGTGCCGTTTATCTTGAAGGCATTGAGTTCCTAGCTATTGACAACCAGGTGCAACATGAAGAAAGTAACATCTTAAAGGAAGTCCAAGTCCCGAAGACAAAGTTCAACATGGACCAGTTGTTCTCGCAAAACATAGTGGACAAAAGGAAATGCAACATTGTTTCGGC...

Protein

Download Protein FASTA

245 aa · TkA08G198730|TK1151|PROTEIN

MMIELCRFSNHKKDTDFEFLLESFSRCYCESCAVYLEGIEFLAIDNQVQHEESNILKEVQVPKTKFNMDQLFSQNIVDKRKCNIVSAKEALYVYYDVKLSNTKPSVQYTRFQDVIELQRQQVFHIKSKIESQTWSPDTEYACYLVFKLSEKCRGLHCPVIVRNLLHRKYEEKQIIYFRSPTPCNVDDTDRVPKEREDGWMEVNVWQFNSSNELRDDCIFINLKLISYEGTMFGLIISDLEFRPMR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G198730`
TK1151 ID	TkA08G198730
OH-1004 ID	LXL04_032394
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	64.000
Protein coverage (%)	TK1151 99.184 / OH-1004 17.502 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G198730

Location Chr08:51854310-51855733 (+)

Description Similar to At5g59700: Probable receptor-like protein kinase At5g59700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02360`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At1g09155`	F-box protein PP2-B15.	No verified direct reference in this release
`At1g56250`	Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032394 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0051924 regulation of calcium ion transport Biological Process

GO:0080147 root hair cell development Biological Process

GO:0097275 intracellular ammonium homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G59700

ath:AT5G61350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.571

Rank 1 · TkA08G198730 · TK1151

Cytoplasm0.496

Rank 2 · TkA08G198730 · TK1151

Cell membrane0.074

Rank 3 · TkA08G198730 · TK1151

Endoplasmic reticulum0.054

Rank 4 · TkA08G198730 · TK1151

Extracellular0.038

Rank 5 · TkA08G198730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14299PP21-41 aa

PF14299PP281-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G198730	`PF14299`	PP2	1	41	6.1e-23	82.2
TkA08G198730	`PF14299`	PP2	81	243	6.1e-23	82.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVQ6`	Arabidopsis thaliana	sp\|Q9ZVQ6\|P2B10_ARATH F-box protein PP2-B10	26.200%	Swiss-Prot	Low
`O80494`	Arabidopsis thaliana	sp\|O80494\|P2B15_ARATH F-box protein PP2-B15	25.900%	Swiss-Prot	Low
`Q9C7K0`	Arabidopsis thaliana	sp\|Q9C7K0\|VBF_ARATH F-box protein VBF	23.600%	Swiss-Prot	Low

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