LXL04_032394 | RubberDandelionOmics

Gene overview

LXL04_032394

Reference: OH-1004 Chr: Chr07 Coordinates: 21714216-21721808 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4134 bp · LXL04_032394|LXL04_032394|OH1004|cDNA

ATGTCTTATGCACTTAATGCGATTTCTCACTTACGAATCCCATATGAAGATCATATCGAATCAGCTACCGATGACATGGATGATGAAAACATCATTGGCGAAAACGATGAATGTGTAAGTTACAAAGGGAAACTTTTGTGGTCTGGACAGTTGATCGATATAGTTGCACAAGAATATGATCGCCATCTCTCTGAAGGTGTCTCCAAGTTTGAAGCTAATGCTTTAATACTTTCTAGTCTCAAGCATAAAAACATTGTCTC...

CDS

Download CDS FASTA

4134 bp · LXL04_032394|LXL04_032394|OH1004|CDS

ATGTCTTATGCACTTAATGCGATTTCTCACTTACGAATCCCATATGAAGATCATATCGAATCAGCTACCGATGACATGGATGATGAAAACATCATTGGCGAAAACGATGAATGTGTAAGTTACAAAGGGAAACTTTTGTGGTCTGGACAGTTGATCGATATAGTTGCACAAGAATATGATCGCCATCTCTCTGAAGGTGTCTCCAAGTTTGAAGCTAATGCTTTAATACTTTCTAGTCTCAAGCATAAAAACATTGTCTC...

Protein

Download Protein FASTA

1377 aa · LXL04_032394|LXL04_032394|OH1004|PROTEIN

MSYALNAISHLRIPYEDHIESATDDMDDENIIGENDECVSYKGKLLWSGQLIDIVAQEYDRHLSEGVSKFEANALILSSLKHKNIVSLVGFCEDPYWVIIVTKYEAHNKSLDKYLNDYSSLSWMKRLRICVGIARGLSYLHYEEGRNYSVIHCNIKSSSILLDDNWEPKISYFGNSIRTPVAQRHRLLHAKHSGTIGYMDEIYEKTKGVTHKVDVFAFGVVLFEVLFGCEAWSAEDDDVDGESLVQSARCHYQKGTLEDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032394`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032394

Location Chr07:21714216-21721808 (+)

Description Similar to At5g59700: Probable receptor-like protein kinase At5g59700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At5g61350`	Probable receptor-like protein kinase At5g61350.	No verified direct reference in this release
`At2g23200`	Probable receptor-like protein kinase At2g23200.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032394 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0051924 regulation of calcium ion transport Biological Process

GO:0080147 root hair cell development Biological Process

GO:0097275 intracellular ammonium homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G59700

ath:AT5G61350

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.486

Rank 1 · LXL04_032394 · OH-1004

Cell membrane0.358

Rank 2 · LXL04_032394 · OH-1004

Nucleus0.306

Rank 3 · LXL04_032394 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_032394 · OH-1004

Lysosome / Vacuole0.039

Rank 5 · LXL04_032394 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr64-302 aa

PF00069.32Pkinase68-300 aa

PF07714.24PK_Tyr_Ser-Thr365-590 aa

PF00069.32Pkinase398-663 aa

PF07714.24PK_Tyr_Ser-Thr706-960 aa

PF00069.32Pkinase719-961 aa

PF14299.14PP21034-1173 aa

PF14299.14PP21210-1372 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032394	`PF07714.24`	PK_Tyr_Ser-Thr	64	302	4.7e-104	348.0
LXL04_032394	`PF00069.32`	Pkinase	68	300	2.3e-93	313.1
LXL04_032394	`PF07714.24`	PK_Tyr_Ser-Thr	365	590	4.7e-104	348.0
LXL04_032394	`PF00069.32`	Pkinase	398	663	2.3e-93	313.1
LXL04_032394	`PF07714.24`	PK_Tyr_Ser-Thr	706	960	4.7e-104	348.0
LXL04_032394	`PF00069.32`	Pkinase	719	961	2.3e-93	313.1
LXL04_032394	`PF14299.14`	PP2	1034	1173	6.7e-41	140.4
LXL04_032394	`PF14299.14`	PP2	1210	1372	6.7e-41	140.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	40.774%	Swiss-Prot	weak database homology
`Q9FLJ8`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g61350	42.169%	Swiss-Prot	weak database homology
`O22187`	Arabidopsis thaliana	Probable receptor-like protein kinase At2g23200	42.857%	Swiss-Prot	weak database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	40.122%	Swiss-Prot	weak database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	41.018%	Swiss-Prot	weak database homology

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