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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G190580
Reference: TK1151 Chr: Chr08 Coordinates: 49805028-49805876 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

816 bp · TkA08G190580|TK1151|cDNA

ATGGTAGCATCGAGCTCCAAAACCTTCTCCACAAATTCCTTCTTTACTCCTCTTTTCATCTGCATATTGGGAATCGGCGCCACTGCTTTAGCCATACTCATATACCATCTCCTAGTTGTTAGATACTGCATGCGAAGACAAGCCGCGAGAATGGCGTCGATACAGACGTTAGCCGGAGCTGAAATACCCACCGGGGTAGACGAAAAGACGCTTCTAACAATCCCGATAATCACCTACACCAGACCCGATTCCGCCACGGA...

CDS

Download CDS FASTA

816 bp · TkA08G190580|TK1151|CDS

ATGGTAGCATCGAGCTCCAAAACCTTCTCCACAAATTCCTTCTTTACTCCTCTTTTCATCTGCATATTGGGAATCGGCGCCACTGCTTTAGCCATACTCATATACCATCTCCTAGTTGTTAGATACTGCATGCGAAGACAAGCCGCGAGAATGGCGTCGATACAGACGTTAGCCGGAGCTGAAATACCCACCGGGGTAGACGAAAAGACGCTTCTAACAATCCCGATAATCACCTACACCAGACCCGATTCCGCCACGGA...

Protein

Download Protein FASTA

271 aa · TkA08G190580|TK1151|PROTEIN

MVASSSKTFSTNSFFTPLFICILGIGATALAILIYHLLVVRYCMRRQAARMASIQTLAGAEIPTGVDEKTLLTIPIITYTRPDSATDPYECAVCLGDVDNGDMVRMLPNCKHMFHVRCIDDWFAGHTSCPVCRVPVVAPDDDQVRSCPVCRSSVGALGDDRSSVAIDVNLDGNDGELTSGPRIRPGEMLRHCNSLVLPRETKEKLSGMELKRSLSMGQSTCVTIDIQIDNVDKDCEYYSSSLRGFLRVSSKVRQSISRMC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G190580
TK1151 IDTkA08G190580
OH-1004 IDLXL04_032599
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.000
Protein coverage (%)TK1151 95.572 / OH-1004 97.826
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G190580
LocationChr08:49805028-49805876 (+)
DescriptionSimilar to ATL1: RING-H2 finger protein ATL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g35910 RING-H2 finger protein ATL70. No verified direct reference in this release
At4g15975 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At5g05810 RING-H2 finger protein ATL43. No verified direct reference in this release
At5g58580 RING-H2 finger protein ATL63. No verified direct reference in this release
At2g27940 RING-H2 finger protein ATL57. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048443 stamen development Biological Process
GO:0080141 regulation of jasmonic acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04360
ath:AT4G17905
ath:AT5G05280
ath:AT5G17600
dosa:Os04g0590900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.351
Rank 1 · TkA08G190580 · TK1151
Cytoplasm0.252
Rank 2 · TkA08G190580 · TK1151
Nucleus0.250
Rank 3 · TkA08G190580 · TK1151
Endoplasmic reticulum0.194
Rank 4 · TkA08G190580 · TK1151
Lysosome / Vacuole0.131
Rank 5 · TkA08G190580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27822SIGLECL1_C12-56 aa
PF13771zf-HC5HC2H70-119 aa
PF23413zf_RING_Vps8_fungal87-94 aa
PF05883Baculo_RING88-134 aa
PF13920zf-C3HC4_389-136 aa
PF13639zf-RING_290-133 aa
PF17123zf-RING_1190-119 aa
PF13923zf-C3HC4_290-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G190580PF27822SIGLECL1_C12560.1612.6
TkA08G190580PF13771zf-HC5HC2H701190.05514.4
TkA08G190580PF23413zf_RING_Vps8_fungal87945.77.0
TkA08G190580PF05883Baculo_RING881340.04914.3
TkA08G190580PF13920zf-C3HC4_3891361.2e-0525.8
TkA08G190580PF13639zf-RING_2901333.2e-1350.4
TkA08G190580PF17123zf-RING_11901191.6e-1144.4
TkA08G190580PF13923zf-C3HC4_2901321.3e-0628.8
TkA08G190580PF14634zf-RING_5901333.4e-0524.4
TkA08G190580PF17120zf-RING_16901310.002817.9
TkA08G190580PF21202SLX1_C901530.09913.7
TkA08G190580PF14446Prok-RING_1901190.511.3
TkA08G190580PF11793FANCL_C901271.310.1
TkA08G190580PF00097zf-C3HC4911322.2e-0524.9
TkA08G190580PF13445zf-RING_UBOX911300.0009619.8
TkA08G190580PF12861zf-ANAPC11911340.001619.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RX29Arabidopsis thalianasp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL7040.000%Swiss-ProtLow
Q8LF65Arabidopsis thalianasp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL1743.700%Swiss-ProtLow
Q5EAE9Arabidopsis thalianasp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL4337.200%Swiss-ProtLow
Q9LUZ9Arabidopsis thalianasp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL6341.300%Swiss-ProtLow
Q9SJJ7Arabidopsis thalianasp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL5733.300%Swiss-ProtLow

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