TkA08G184360 | RubberDandelionOmics

Gene overview

TkA08G184360

Reference: TK1151 Chr: Chr08 Coordinates: 48145741-48147257 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1310 bp · TkA08G184360|TK1151|cDNA

GGAACAGTTGATCTTTGCAAAAGGTAGTAGTTGTACATATATAATTATAACCAGTCATCTTTTGGGCGAGTGTTGCATTTTGTATTAATCACTCCATTATAAATCCTTCATCGAACCCACTCTTCATACATCATCAAACTCAATCTTCTACATTCAGTTTCAGTTTCTGTCCAATTCTTACAATGAAGTTCACTCTTTTCCACGTTTACACACTTCTTTCTGTATCACTTCTGGGATGTCGTGCAGTGACTCCCGAAGTT...

CDS

Download CDS FASTA

1026 bp · TkA08G184360|TK1151|CDS

ATGAAGTTCACTCTTTTCCACGTTTACACACTTCTTTCTGTATCACTTCTGGGATGTCGTGCAGTGACTCCCGAAGTTTACTGGAAGTCTCTGCTCCCAAACAGTCCAATGCCCAAATCAGTCAAAGATATTCTTGTGTCCACCGCAGAATGGACGGAAGAGAAATTCGCCATGGTCGGAGTTGGTGCCGGCGGTGTGGAGGTCGGCGCCGGAACACCCGGGGAACAAACGGAAGTCGGTGTCGGAAGAGGTGGAGTCGC...

Protein

Download Protein FASTA

341 aa · TkA08G184360|TK1151|PROTEIN

MKFTLFHVYTLLSVSLLGCRAVTPEVYWKSLLPNSPMPKSVKDILVSTAEWTEEKFAMVGVGAGGVEVGAGTPGEQTEVGVGRGGVAVHTTHKGKPVCVGVHPGPDPFNYLYAASADQLKDDPNVALFFLENDLHQGGEMKLHFTKVDPSQKTTFLPRNIADSIPFSSNKLPQIYNKFSIKPESPEAEIMKQTLNECEKKGIEGEEKYCATSLESMVDFSTTKLGKKVKAISTEINAKESRPLQKYKIEGAKKLVADKAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G184360`
TK1151 ID	TkA08G184360
OH-1004 ID	LXL04_032522
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G184360

Location Chr08:48145741-48147257 (-)

Description Similar to RD22: BURP domain protein RD22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g25610`	Acts to suppress chlorophyll degradation under moisture stress.	AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance.2014 · DOI: 10.1371/journal.pone.0110065

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0733500`	BURP domain-containing protein 3.	No verified direct reference in this release
`Os04g0225700`	BURP domain-containing protein 5.	No verified direct reference in this release
`Os11g0170900`	BURP domain-containing protein 17.	No verified direct reference in this release
`Os05g0215066`	BURP domain-containing protein 6.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032522 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G25610

dosa:Os01g0733500

dosa:Os04g0225700

dosa:Os05g0215066

dosa:Os11g0170900

osa:4335212

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.414

Rank 1 · TkA08G184360 · TK1151

Extracellular0.352

Rank 2 · TkA08G184360 · TK1151

Endoplasmic reticulum0.173

Rank 3 · TkA08G184360 · TK1151

Cytoplasm0.170

Rank 4 · TkA08G184360 · TK1151

Cell membrane0.077

Rank 5 · TkA08G184360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03181BURP127-340 aa

PF12485SPIDER207-250 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G184360	`PF03181`	BURP	127	340	1.9e-90	302.9
TkA08G184360	`PF12485`	SPIDER	207	250	0.027	16.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q08298`	Arabidopsis thaliana	sp\|Q08298\|RD22_ARATH BURP domain protein RD22	52.000%	Swiss-Prot	High
`Q942D4`	Oryza sativa subsp. japonica	sp\|Q942D4\|BURP3_ORYSJ BURP domain-containing protein 3	58.800%	Swiss-Prot	Medium
`Q0JEP3`	Oryza sativa subsp. japonica	sp\|Q0JEP3\|BURP5_ORYSJ BURP domain-containing protein 5	41.900%	Swiss-Prot	Medium
`B9G9L9`	Oryza sativa subsp. japonica	sp\|B9G9L9\|BURPH_ORYSJ BURP domain-containing protein 17	51.600%	Swiss-Prot	Medium
`Q6I5B2`	Oryza sativa subsp. japonica	sp\|Q6I5B2\|BURP6_ORYSJ BURP domain-containing protein 6	46.100%	Swiss-Prot	Medium

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