TkA08G181740 | RubberDandelionOmics

Gene overview

TkA08G181740

Reference: TK1151 Chr: Chr08 Coordinates: 47503816-47504593 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

648 bp · TkA08G181740|TK1151|cDNA

ATGTCAGAAGCTCAAAGGTTAACAGTAAACGGAAGTTTCAATTACAGCAATGGCTACACAAACGGGGCAATTTCACTTAGTTCTCCTGCAACCAGATCCGCCATTGATGAATTTTGTAACGCACTTAATGGAAAAAACCCAATTCACAGTATTTTAATCGCAAACAATGGAATGGCAGCCGTGAAATTCATAAGAAGTTTGAGAACATGGAGTTACGAAACATTTGCTTCAGAAAAAGCGATCCAATTGGTGGCCATGGC...

CDS

Download CDS FASTA

648 bp · TkA08G181740|TK1151|CDS

ATGTCAGAAGCTCAAAGGTTAACAGTAAACGGAAGTTTCAATTACAGCAATGGCTACACAAACGGGGCAATTTCACTTAGTTCTCCTGCAACCAGATCCGCCATTGATGAATTTTGTAACGCACTTAATGGAAAAAACCCAATTCACAGTATTTTAATCGCAAACAATGGAATGGCAGCCGTGAAATTCATAAGAAGTTTGAGAACATGGAGTTACGAAACATTTGCTTCAGAAAAAGCGATCCAATTGGTGGCCATGGC...

Protein

Download Protein FASTA

215 aa · TkA08G181740|TK1151|PROTEIN

MSEAQRLTVNGSFNYSNGYTNGAISLSSPATRSAIDEFCNALNGKNPIHSILIANNGMAAVKFIRSLRTWSYETFASEKAIQLVAMATPEDIRINAEHIRIADQFVEVPGGTKNNNYANVQLIVEGRNRIAVDKREPRFSLKNERELDKSYQCSDCNGVKRRNWLKESRVGTEQKRTTNLEKFVNHEREETKSRIRQRGRRRWQAENVDVYQNRW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G181740`
TK1151 ID	TkA08G181740
OH-1004 ID	LXL04_032493
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	85.100
Protein coverage (%)	TK1151 80.000 / OH-1004 65.260 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G181740

Location Chr08:47503816-47504593 (-)

Description Similar to ACC2: Acetyl-CoA carboxylase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g36160`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.016010.x gurke and pasticcino3 mutants affected in embryo development are impaired in acetyl-CoA carboxylase.2004 · DOI: 10.1038/sj.embor.7400124 The GURKE gene encoding an acetyl-CoA carboxylase is required for partitioning the embryo apex into three subregions in Arabidopsis.2004 · DOI: 10.1093/pcp/pch148 Targeting of the Arabidopsis homomeric acetyl-coenzyme A carboxylase to plastids of rapeseeds.1997 · DOI: 10.1104/pp.113.1.75 The PASTICCINO genes of Arabidopsis thaliana are involved in the control of cell division and differentiation.1998 · DOI: 10.1242/dev.125.5.909
`At1g36180`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0363300`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release
`Os05g0295300`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032493 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006085 acetyl-CoA biosynthetic process Biological Process

GO:0006606 protein import into nucleus Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009933 meristem structural organization Biological Process

GO:0010072 primary shoot apical meristem specification Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0042759 long-chain fatty acid biosynthetic process Biological Process

GO:0048364 root development Biological Process

GO:0048367 shoot system development Biological Process

GO:2001295 malonyl-CoA biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G36160

ath:AT1G36180

dosa:Os05g0295300

dosa:Os10g0363300

osa:4348450

sce:YNR016C

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.510

Rank 1 · TkA08G181740 · TK1151

Cytoplasm0.323

Rank 2 · TkA08G181740 · TK1151

Mitochondrion0.124

Rank 3 · TkA08G181740 · TK1151

Cell membrane0.047

Rank 4 · TkA08G181740 · TK1151

Endoplasmic reticulum0.026

Rank 5 · TkA08G181740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26216GDPGP1_C34-69 aa

PF00289Biotin_carb_N48-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G181740	`PF26216`	GDPGP1_C	34	69	0.093	13.1
TkA08G181740	`PF00289`	Biotin_carb_N	48	131	4e-13	50.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38970`	Arabidopsis thaliana	sp\|Q38970\|ACC1_ARATH Acetyl-CoA carboxylase 1	76.800%	Swiss-Prot	Medium
`F4I1L3`	Arabidopsis thaliana	sp\|F4I1L3\|ACC2_ARATH Acetyl-CoA carboxylase 2	71.100%	Swiss-Prot	Medium
`Q8S6N5`	Oryza sativa subsp. japonica	sp\|Q8S6N5\|ACC1_ORYSJ Acetyl-CoA carboxylase 1	73.400%	Swiss-Prot	Medium
`B9FK36`	Oryza sativa subsp. japonica	sp\|B9FK36\|ACC2_ORYSJ Acetyl-CoA carboxylase 2	75.700%	Swiss-Prot	Low

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