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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G181120
Reference: TK1151 Chr: Chr08 Coordinates: 47377572-47378996 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

945 bp · TkA08G181120|TK1151|cDNA

ATGAAAGGCCGAGTCGGAATTATTGGTGAAATCATCTCAATAAACCTCGAAACCATTGAGTTGGTTACAGACCATGGTGAAACTGTTCTTCATCTTGCGGTGAAGTATAACCAGTTTGAGGTTCTAAAACACTTAAAGGAAACAGTGAACATCGTAAAACTCGTGAATGTACAAGACAACGACGGCAGCACCGTGTTACATGTCGCAACAGCCGGAAAACTCACTACAATGGTGACATATCTACTTAAAAGCGGTGTGGA...

CDS

Download CDS FASTA

945 bp · TkA08G181120|TK1151|CDS

ATGAAAGGCCGAGTCGGAATTATTGGTGAAATCATCTCAATAAACCTCGAAACCATTGAGTTGGTTACAGACCATGGTGAAACTGTTCTTCATCTTGCGGTGAAGTATAACCAGTTTGAGGTTCTAAAACACTTAAAGGAAACAGTGAACATCGTAAAACTCGTGAATGTACAAGACAACGACGGCAGCACCGTGTTACATGTCGCAACAGCCGGAAAACTCACTACAATGGTGACATATCTACTTAAAAGCGGTGTGGA...

Protein

Download Protein FASTA

314 aa · TkA08G181120|TK1151|PROTEIN

MKGRVGIIGEIISINLETIELVTDHGETVLHLAVKYNQFEVLKHLKETVNIVKLVNVQDNDGSTVLHVATAGKLTTMVTYLLKSGVDVNAINQKGYTALDIVESDGSNSSGLQIVPALLEAGAKTCEQLPRTSRDTIKEVVRRISTTHSLDTKRVDSSIHRYRYRKHSHRRSKQIELQHEGLRNARNTITIVAVLIATVTFSAGINPPGGFSQETGKAKIGSKQPFKVFMLCNIMALFLSLGCTLVVLLGLSILLGKQWS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G181120
TK1151 IDTkA08G181120
OH-1004 IDLXL04_032478
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)72.800
Protein coverage (%)TK1151 88.217 / OH-1004 55.072
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G181120
LocationChr08:47377572-47378996 (-)
DescriptionSimilar to At5g02620: Ankyrin repeat-containing protein At5g02620
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12360 Involved in salt stress tolerance.
ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
At2g01680 Ankyrin repeat-containing protein At2g01680. No verified direct reference in this release
At5g02620 Ankyrin repeat-containing protein At5g02620. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0837000 Involved in salt stress tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032478 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT2G01680
ath:AT5G02620
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.640
Rank 1 · TkA08G181120 · TK1151
Cytoplasm0.148
Rank 2 · TkA08G181120 · TK1151
Nucleus0.137
Rank 3 · TkA08G181120 · TK1151
Endoplasmic reticulum0.130
Rank 4 · TkA08G181120 · TK1151
Lysosome / Vacuole0.060
Rank 5 · TkA08G181120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796Ank_220-46 aa
PF13857Ank_524-45 aa
PF13637Ank_424-43 aa
PF00023Ank25-46 aa
PF13606Ank_325-47 aa
PF12796Ank_230-124 aa
PF13857Ank_555-101 aa
PF13637Ank_455-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G181120PF12796Ank_220461.4e-1248.7
TkA08G181120PF13857Ank_524454.8e-1246.6
TkA08G181120PF13637Ank_424436e-0833.5
TkA08G181120PF00023Ank25461.4e-1144.7
TkA08G181120PF13606Ank_325478.2e-0832.6
TkA08G181120PF12796Ank_2301241.4e-1248.7
TkA08G181120PF13857Ank_5551014.8e-1246.6
TkA08G181120PF13637Ank_455716e-0833.5
TkA08G181120PF00023Ank61921.4e-1144.7
TkA08G181120PF13606Ank_361908.2e-0832.6
TkA08G181120PF06086Pox_A30L_A26L_N62832.88.3
TkA08G181120PF13637Ank_4771026e-0833.5
TkA08G181120PF00023Ank951241.4e-1144.7
TkA08G181120PF13606Ank_3951028.2e-0832.6
TkA08G181120PF06086Pox_A30L_A26L_N1281992.88.3
TkA08G181120PF13962PGG1802531.5e-2280.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7A2Arabidopsis thalianasp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN131.500%Swiss-ProtMedium
Q9ZU96Arabidopsis thalianasp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g0168032.600%Swiss-ProtMedium
Q6AWW5Arabidopsis thalianasp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g0262036.500%Swiss-ProtLow
A2CIR5Oryza sativa subsp. japonicasp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR430.000%Swiss-ProtMedium

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