TkA08G180810 | RubberDandelionOmics

Gene overview

TkA08G180810

Reference: TK1151 Chr: Chr08 Coordinates: 47295633-47298882 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2325 bp · TkA08G180810|TK1151|cDNA

TTTATAGTTATGGGAAAGTAGTAAATCGGAGGCGTGGGATATTTGGAGACCCGATGGTCTCCTTTTTGTGTTATAATTTCAGACTTTAAACCCTACATTCCAGTTTTGAAGCGCCGCACCTTTACCAGCCAACATCTCCTTCTCCTCTTCGTTCATCGTTCATCAACCAATATCATCCATCTGTCCCTCCCATTTGTATCTGCCTAGGAAGGAAGCACCCCGGGAACAGCCGCACACCACCGGAACAGCCGAGTTACCAG...

CDS

Download CDS FASTA

1638 bp · TkA08G180810|TK1151|CDS

ATGGGACTCCAATCACAATCCTATGGTATCCAGGGAATGCTAAAAGAAGGGCACAAACATCTTTCCGGATTAGATGAAGCCGTTGTTAAGAATATCGATGCTTGTAAACAGCTTTCAACCATTACCAGAACTTCTCTTGGTCCCAATGGTATGAACAAAATGGTTATCAATCATCTGGACAAGCTATTTGTGACGAGTGACACTGCAACTATTGTGAATGAACTTGAGATTCAGCATCCAGCAGCAAAAATATTGGTTTT...

Protein

Download Protein FASTA

545 aa · TkA08G180810|TK1151|PROTEIN

MGLQSQSYGIQGMLKEGHKHLSGLDEAVVKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTSDTATIVNELEIQHPAAKILVLAGKAQQEEIGDGANLTVSFAGELLQGAEDLIRMGLHPSEIIIGYTKAINKVVQILESLVEQGSETMDVRNRDQVILRMKAAVASKQYGQEAVLCPLIADACIQVCPQNPVNFNVDNVRVAKLVGGGLQNCTTVKGMVLKGDTVGSIKRTEKAKVVVIAGGVDTTATETKGTVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G180810`
TK1151 ID	TkA08G180810
OH-1004 ID	LXL04_032481
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G180810

Location Chr08:47295633-47298882 (+)

Description Similar to CCT8: T-complex protein 1 subunit theta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03960`	Molecular chaperone; assists the folding of proteins upon ATP hydrolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0007339 binding of sperm to zona pellucida Biological Process

GO:0032212 positive regulation of telomere maintenance via telomerase Biological Process

GO:0050821 protein stabilization Biological Process

GO:0051050 positive regulation of transport Biological Process

GO:0002199 zona pellucida receptor complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005813 centrosome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005832 chaperonin-containing T-complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G03960

cbr:CBG_08425

ddi:DDB_G0276233

gga:418486

mmu:12469

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.765

Rank 1 · TkA08G180810 · TK1151

Nucleus0.283

Rank 2 · TkA08G180810 · TK1151

Mitochondrion0.064

Rank 3 · TkA08G180810 · TK1151

Cell membrane0.046

Rank 4 · TkA08G180810 · TK1151

Endoplasmic reticulum0.035

Rank 5 · TkA08G180810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00118Cpn60_TCP138-530 aa

PF23252KH_PARP14_553-82 aa

PF01915Glyco_hydro_3_C83-304 aa

PF30415LarB_N125-180 aa

PF23252KH_PARP14_5127-148 aa

PF23252KH_PARP14_5236-249 aa

PF30415LarB_N276-295 aa

PF23252KH_PARP14_5282-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G180810	`PF00118`	Cpn60_TCP1	38	530	5.5e-152	507.6
TkA08G180810	`PF23252`	KH_PARP14_5	53	82	0.48	11.3
TkA08G180810	`PF01915`	Glyco_hydro_3_C	83	304	0.095	13.4
TkA08G180810	`PF30415`	LarB_N	125	180	0.0057	17.3
TkA08G180810	`PF23252`	KH_PARP14_5	127	148	0.48	11.3
TkA08G180810	`PF23252`	KH_PARP14_5	236	249	0.48	11.3
TkA08G180810	`PF30415`	LarB_N	276	295	0.0057	17.3
TkA08G180810	`PF23252`	KH_PARP14_5	282	297	0.48	11.3
TkA08G180810	`PF24530`	DUF7597	315	374	0.29	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94K05`	Arabidopsis thaliana	sp\|Q94K05\|TCPQ_ARATH T-complex protein 1 subunit theta	79.500%	Swiss-Prot	High

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