LXL04_032481 | RubberDandelionOmics

Gene overview

LXL04_032481

Reference: OH-1004 Chr: Chr07 Coordinates: 23929915-23932455 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1638 bp · LXL04_032481|LXL04_032481|OH1004|cDNA

ATGGGACTCCAATCACAATCCTATGGTATCCAGGGAATGCTAAAAGAAGGGCACAAACATCTTTCCGGATTAGATGAAGCCGTTGTTAAGAATATCGATGCTTGTAAACAGCTTTCAACCATTACCAGAACTTCTCTTGGTCCCAATGGTATGAACAAAATGGTTATCAATCATCTGGACAAGCTATTTGTGACGAGTGACACTGCAACTATTGTGAATGAACTTGAGATTCAGCATCCAGCAGCAAAAATATTGGTTTT...

CDS

Download CDS FASTA

1638 bp · LXL04_032481|LXL04_032481|OH1004|CDS

ATGGGACTCCAATCACAATCCTATGGTATCCAGGGAATGCTAAAAGAAGGGCACAAACATCTTTCCGGATTAGATGAAGCCGTTGTTAAGAATATCGATGCTTGTAAACAGCTTTCAACCATTACCAGAACTTCTCTTGGTCCCAATGGTATGAACAAAATGGTTATCAATCATCTGGACAAGCTATTTGTGACGAGTGACACTGCAACTATTGTGAATGAACTTGAGATTCAGCATCCAGCAGCAAAAATATTGGTTTT...

Protein

Download Protein FASTA

545 aa · LXL04_032481|LXL04_032481|OH1004|PROTEIN

MGLQSQSYGIQGMLKEGHKHLSGLDEAVVKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTSDTATIVNELEIQHPAAKILVLAGKAQQEEIGDGANLTVSFAGELLQGAEDLIRMGLHPSEIIIGYTKAINKVVQILESLVEQGSETMDVRNRDQVILRMKAAVASKQYGQEAVLCPLIADACIQVCPQNPVNFNVDNVRVAKLVGGGLQNCTTVKGMVLKGDTVGSIKRTEKAKVVVIAGGVDTTATETKGTVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032481`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_032481

Location Chr07:23929915-23932455 (+)

Description Similar to CCT8: T-complex protein 1 subunit theta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03960`	Molecular chaperone; assists the folding of proteins upon ATP hydrolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_032481 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0007339 binding of sperm to zona pellucida Biological Process

GO:0032212 positive regulation of telomere maintenance via telomerase Biological Process

GO:0050821 protein stabilization Biological Process

GO:0051050 positive regulation of transport Biological Process

GO:0002199 zona pellucida receptor complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005813 centrosome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005832 chaperonin-containing T-complex Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G03960

cbr:CBG_08425

ddi:DDB_G0276233

gga:418486

mmu:12469

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.765

Rank 1 · LXL04_032481 · OH-1004

Nucleus0.285

Rank 2 · LXL04_032481 · OH-1004

Mitochondrion0.064

Rank 3 · LXL04_032481 · OH-1004

Cell membrane0.047

Rank 4 · LXL04_032481 · OH-1004

Endoplasmic reticulum0.036

Rank 5 · LXL04_032481 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00118.30Cpn60_TCP138-530 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032481	`PF00118.30`	Cpn60_TCP1	38	530	5.5e-152	507.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94K05`	Arabidopsis thaliana	T-complex protein 1 subunit theta	79.851%	Swiss-Prot	strong database homology

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