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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G172000
Reference: TK1151 Chr: Chr08 Coordinates: 44986155-44996888 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4868 bp · TkA08G172000|TK1151|cDNA

TATCGAACGCCGTCTTCCTTCACATAACTCATTAATTTGTTCCCCTCGCCTTTGTTTCTCTCCTTTTATAAACACATACATTATGTCTTCTTCATCTTCCAACCAGTTTGGTGACTTAAAAATCCCACTTCGACTTATAAAATTAGCCACCAACAACTTTTCCGATGAAAAACTCATCAGAAGAGGCGGATTTGGAAAAATTTACAAAGCACAACTCCGTCGGTCCGGTAAAGTGGACGATATTGTTGTACGGAGGTTAG...

CDS

Download CDS FASTA

4530 bp · TkA08G172000|TK1151|CDS

ATGTCTTCTTCATCTTCCAACCAGTTTGGTGACTTAAAAATCCCACTTCGACTTATAAAATTAGCCACCAACAACTTTTCCGATGAAAAACTCATCAGAAGAGGCGGATTTGGAAAAATTTACAAAGCACAACTCCGTCGGTCCGGTAAAGTGGACGATATTGTTGTACGGAGGTTAGATCCTGAGTACAGGCAAGGACAGAAAGAGTTTTTGAAGGAGCTTTCGCAGCTTGCTATACTGAAACATGACAATCTGGTCTC...

Protein

Download Protein FASTA

1509 aa · TkA08G172000|TK1151|PROTEIN

MSSSSSNQFGDLKIPLRLIKLATNNFSDEKLIRRGGFGKIYKAQLRRSGKVDDIVVRRLDPEYRQGQKEFLKELSQLAILKHDNLVSIIGYCDDEEGEKIIINKYETHGSLDKHLKDPTLTWMRRLEICVSVARALCYIHYDNGRDFSVIHKNIKSSKILLDDNWNPKLSGFELSVTNPNDRRHRLRLDRLSGTIGYIDPRYEKTGGVTHKSDVYSFGVVLFEVLCGRRAFDNPEWISAQLEKQDLEEKSLDKMIPSPKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G172000
TK1151 IDTkA08G172000
OH-1004 IDLXL04_032398
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)51.400
Protein coverage (%)TK1151 99.934 / OH-1004 99.856
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G172000
LocationChr08:44986155-44996888 (+)
DescriptionSimilar to At5g24010: Probable receptor-like protein kinase At5g24010
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g51550 May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.
FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release
At5g54380 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis.2007 · DOI: 10.1016/j.cub.2007.05.018
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At5g61350 Probable receptor-like protein kinase At5g61350. No verified direct reference in this release
At5g28680 Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032398 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009723 response to ethylene Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010118 stomatal movement Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0030308 negative regulation of cell growth Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0046777 protein autophosphorylation Biological Process
KEGG gene cross-reference
ath:AT3G51550
ath:AT5G24010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.436
Rank 1 · TkA08G172000 · TK1151
Cell membrane0.427
Rank 2 · TkA08G172000 · TK1151
Nucleus0.280
Rank 3 · TkA08G172000 · TK1151
Endoplasmic reticulum0.051
Rank 4 · TkA08G172000 · TK1151
Golgi apparatus0.043
Rank 5 · TkA08G172000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase28-238 aa
PF07714PK_Tyr_Ser-Thr30-230 aa
PF03109ABC137-68 aa
PF01636APH87-140 aa
PF14531Kinase-like148-227 aa
PF07714PK_Tyr_Ser-Thr405-431 aa
PF07714PK_Tyr_Ser-Thr487-714 aa
PF00069Pkinase488-503 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G172000PF00069Pkinase282381.8e-114382.3
TkA08G172000PF07714PK_Tyr_Ser-Thr302303.4e-122407.5
TkA08G172000PF03109ABC137680.000619.7
TkA08G172000PF01636APH871400.0002221.8
TkA08G172000PF14531Kinase-like1482270.04413.8
TkA08G172000PF07714PK_Tyr_Ser-Thr4054313.4e-122407.5
TkA08G172000PF07714PK_Tyr_Ser-Thr4877143.4e-122407.5
TkA08G172000PF00069Pkinase4885031.8e-114382.3
TkA08G172000PF00069Pkinase5287801.8e-114382.3
TkA08G172000PF03109ABC15706670.000619.7
TkA08G172000PF14531Kinase-like5976500.04413.8
TkA08G172000PF17667Pkinase_fungal6116900.0001621.3
TkA08G172000PF01636APH6216570.0002221.8
TkA08G172000PF02108FliH7418200.04314.5
TkA08G172000PF00069Pkinase81810801.8e-114382.3
TkA08G172000PF07714PK_Tyr_Ser-Thr82010823.4e-122407.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SCZ4Arabidopsis thalianasp|Q9SCZ4|FERON_ARATH Receptor-like protein kinase FERONIA42.900%Swiss-ProtLow
Q9FN92Arabidopsis thalianasp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g5970038.800%Swiss-ProtLow
Q9LK35Arabidopsis thalianasp|Q9LK35|THE1_ARATH Receptor-like protein kinase THESEUS 140.400%Swiss-ProtLow
Q9FLJ8Arabidopsis thalianasp|Q9FLJ8|Y5613_ARATH Probable receptor-like protein kinase At5g6135038.600%Swiss-ProtLow
Q3E8W4Arabidopsis thalianasp|Q3E8W4|ANX2_ARATH Receptor-like protein kinase ANXUR241.200%Swiss-ProtLow

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