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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G170190
Reference: TK1151 Chr: Chr08 Coordinates: 44518680-44524446 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2199 bp · TkA08G170190|TK1151|cDNA

CTAGAGTCTTCTCTTCCCTCTCATTTTCACCCAAATTGAGGAGAATAGTGATTTGTTGGTCAAACTAGGGTTAAAGGTTGGATTAAGGTGCAATGTAAGAAGAAAGGTTAATCTAGCGTCCTAAAGGCATCGTAAGGCAGCCATGGCAGATCCTCCCAGTACTCATCCTCCGACTCATTTCTTCAAGTTCGTCCGTCCAGGCTACTTATTTAAGCTTTCGATTCCAAGATCTTTTATGACGATCATGAACGGAAAGAGAT...

CDS

Download CDS FASTA

1632 bp · TkA08G170190|TK1151|CDS

ATGGCAGATCCTCCCAGTACTCATCCTCCGACTCATTTCTTCAAGTTCGTCCGTCCAGGCTACTTATTTAAGCTTTCGATTCCAAGATCTTTTATGACGATCATGAACGGAAAGAGATGCTCGAAAGCAATACTGAGACGTGGGCGTCGCGAATGGTCGGTAAACATTGACGACAAGGGTTTTGGTGACGGTTGGAAGAGGTTTGTGACAGAGAATGGAGTGCAAGAGCGTGACTTTATTTTCTTCAAAAATCAAGGAAG...

Protein

Download Protein FASTA

543 aa · TkA08G170190|TK1151|PROTEIN

MADPPSTHPPTHFFKFVRPGYLFKLSIPRSFMTIMNGKRCSKAILRRGRREWSVNIDDKGFGDGWKRFVTENGVQERDFIFFKNQGSMVFDVFVCDQFTSCEKDYPNLFDEMEGEEHLTESDTIRTQEPKKLKKRKRNEEKIQVSDDSGCFISIMTPYVMNKSRLYVPKKFAKSNGLITERIYKQVYLEDDTQRSWPATLHKSKSKLFLTGWHKFRINNHLEVGDMCRFKLVQNGEVPVFKCSKIEKNFTKNHTEVKETS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G170190
TK1151 IDTkA08G170190
OH-1004 IDLXL04_032377
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.500
Protein coverage (%)TK1151 99.263 / OH-1004 90.741
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G170190
LocationChr08:44518680-44524446 (+)
DescriptionSimilar to REM17: B3 domain-containing protein REM17
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g24645 B3 domain-containing protein REM14. No verified direct reference in this release
At1g26680 B3 domain-containing protein REM17. No verified direct reference in this release
At2g24690 B3 domain-containing protein REM-like 1. No verified direct reference in this release
At2g24700 B3 domain-containing protein REM10. No verified direct reference in this release
At4g00260 Putative B3 domain-containing protein REM15. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032377 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G26680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.972
Rank 1 · TkA08G170190 · TK1151
Cytoplasm0.063
Rank 2 · TkA08G170190 · TK1151
Cell membrane0.020
Rank 3 · TkA08G170190 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA08G170190 · TK1151
Mitochondrion0.007
Rank 5 · TkA08G170190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362B322-92 aa
PF23935DUF727161-82 aa
PF03754At2g31720-like61-80 aa
PF05044HPD137-208 aa
PF02362B3152-242 aa
PF04014MazE_antitoxin161-177 aa
PF03754At2g31720-like186-228 aa
PF02362B3269-360 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G170190PF02362B322926.8e-63209.6
TkA08G170190PF23935DUF727161820.001419.5
TkA08G170190PF03754At2g31720-like61800.2911.6
TkA08G170190PF05044HPD1372080.02715.1
TkA08G170190PF02362B31522426.8e-63209.6
TkA08G170190PF04014MazE_antitoxin1611770.003318.1
TkA08G170190PF03754At2g31720-like1862280.2911.6
TkA08G170190PF02362B32693606.8e-63209.6
TkA08G170190PF04014MazE_antitoxin2853010.003318.1
TkA08G170190PF03754At2g31720-like2933430.2911.6
TkA08G170190PF23935DUF72713063490.001419.5
TkA08G170190PF04014MazE_antitoxin3293490.003318.1
TkA08G170190PF02362B33964856.8e-63209.6
TkA08G170190PF07933DUF16814214620.1412.5
TkA08G170190PF03754At2g31720-like4264700.2911.6
TkA08G170190PF23935DUF72714364910.001419.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GYM4Arabidopsis thalianasp|Q8GYM4|REM14_ARATH B3 domain-containing protein REM1425.800%Swiss-ProtLow
Q84WP3Arabidopsis thalianasp|Q84WP3|REM17_ARATH B3 domain-containing protein REM1735.900%Swiss-ProtMedium
Q8S8E8Arabidopsis thalianasp|Q8S8E8|REML1_ARATH B3 domain-containing protein REM-like 126.500%Swiss-ProtLow
P0DH85Arabidopsis thalianasp|P0DH85|REM10_ARATH B3 domain-containing protein REM1038.700%Swiss-ProtLow
O23076Arabidopsis thalianasp|O23076|REM15_ARATH Putative B3 domain-containing protein REM1526.400%Swiss-ProtLow

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