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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G169290
Reference: TK1151 Chr: Chr08 Coordinates: 44283121-44284905 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1728 bp · TkA08G169290|TK1151|cDNA

ATGCACTTCTCACCATCCAAAATCATCGTCAACAAAAGAGCAGCAGAACAACAATGTTTATCCATCCTCCAAACCTGCACTACACTCCTTAATCTCAACCAAATTCATGCACAAATTCTCAAATTGGGCCTCCAAAATAACCCACTAGTCCTCACCAAATTCACTTCAACCTCATCCGATCTCAATGCCATCGACTACGCTTCACTCATCTTATTCTCCCCAGATGCTAAAACACATCTCTACGATACTTTCCTGTACAA...

CDS

Download CDS FASTA

1728 bp · TkA08G169290|TK1151|CDS

ATGCACTTCTCACCATCCAAAATCATCGTCAACAAAAGAGCAGCAGAACAACAATGTTTATCCATCCTCCAAACCTGCACTACACTCCTTAATCTCAACCAAATTCATGCACAAATTCTCAAATTGGGCCTCCAAAATAACCCACTAGTCCTCACCAAATTCACTTCAACCTCATCCGATCTCAATGCCATCGACTACGCTTCACTCATCTTATTCTCCCCAGATGCTAAAACACATCTCTACGATACTTTCCTGTACAA...

Protein

Download Protein FASTA

575 aa · TkA08G169290|TK1151|PROTEIN

MHFSPSKIIVNKRAAEQQCLSILQTCTTLLNLNQIHAQILKLGLQNNPLVLTKFTSTSSDLNAIDYASLILFSPDAKTHLYDTFLYNTIIRAYAQTNKSKITAVDIYKTMVWNNVMPNKFTYPFVLKACAGVGKLRLGESVHGNVVKFGFDEDTHVLNTMVHMYCSCGGVENARILFDEMPKSDSVSWSAMIGGYTRTGMSTSAVALFREMQIAGVKPDEITMVSVLSACSDLGALELGKWVENYIEREKIPKSIELYNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G169290
TK1151 IDTkA08G169290
OH-1004 IDLXL04_018443
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)43.000
Protein coverage (%)TK1151 97.217 / OH-1004 98.120
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G169290
LocationChr08:44283121-44284905 (+)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At5g48910 Pentatricopeptide repeat-containing protein At5g48910. No verified direct reference in this release
At1g31920 Pentatricopeptide repeat-containing protein At1g31920. No verified direct reference in this release
At1g59720 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT1G74630
ath:AT2G01510
ath:AT4G21065
ath:AT5G48910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.677
Rank 1 · TkA08G169290 · TK1151
Plastid0.188
Rank 2 · TkA08G169290 · TK1151
Nucleus0.050
Rank 3 · TkA08G169290 · TK1151
Cytoplasm0.034
Rank 4 · TkA08G169290 · TK1151
Cell membrane0.006
Rank 5 · TkA08G169290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10602RPN710-47 aa
PF29070MSC6_N18-62 aa
PF23276TPR_2459-109 aa
PF13762MNE173-129 aa
PF29070MSC6_N77-176 aa
PF12854PPR_181-93 aa
PF13812PPR_381-130 aa
PF13041PPR_282-130 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G169290PF10602RPN710470.1312.7
TkA08G169290PF29070MSC6_N18621.2e-0835.2
TkA08G169290PF23276TPR_24591092.8e-1247.4
TkA08G169290PF13762MNE1731290.113.3
TkA08G169290PF29070MSC6_N771761.2e-0835.2
TkA08G169290PF12854PPR_181931.6e-2486.0
TkA08G169290PF13812PPR_3811302.1e-1247.7
TkA08G169290PF13041PPR_2821301.8e-39134.3
TkA08G169290PF19189Mtf2841330.0613.8
TkA08G169290PF01535PPR85992.9e-33112.5
TkA08G169290PF29978ATP18_TPR961420.0002821.5
TkA08G169290PF17177PPR_long1002844.1e-0627.0
TkA08G169290PF12854PPR_11141221.6e-2486.0
TkA08G169290PF23276TPR_241251832.8e-1247.4
TkA08G169290PF01535PPR1261492.9e-33112.5
TkA08G169290PF13812PPR_31491812.1e-1247.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic43.400%Swiss-ProtMedium
Q9FI80Arabidopsis thalianasp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g4891039.100%Swiss-ProtMedium
Q9C6T2Arabidopsis thalianasp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g3192038.100%Swiss-ProtMedium
Q0WQW5Arabidopsis thalianasp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial39.900%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652037.100%Swiss-ProtMedium

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