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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G168340
Reference: TK1151 Chr: Chr08 Coordinates: 43995797-44001114 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3858 bp · TkA08G168340|TK1151|cDNA

AGAGAATCCATGAGTGTATGACTATATAAATGCAACCAAATTTAACTTTAAACCAACACCCCAAATCCACCACAAGTATTTATAAACCTCATCACTCCCTGCGTGTAATCTTTCATCCCCAATTCCGAATTCACTCAAGATTTATAGCCATGGCTTCTGGGAGCAAAGCAAGTTCTGGGTTTAATCCACAATCTCAAAACCCTCCGTCATCATCAACGCCTAGGGTTGATTCAATGAGCAAAGCCATTGCACAATACGCA...

CDS

Download CDS FASTA

3483 bp · TkA08G168340|TK1151|CDS

ATGCAACCAAATTTAACTTTAAACCAACACCCCAAATCCACCACAAGTATTTATAAACCTCATCACTCCCTGCGTGTAATCTTTCATCCCCAATTCCGAATTCACTCAAGATTTATAGCCATGGCTTCTGGGAGCAAAGCAAGTTCTGGGTTTAATCCACAATCTCAAAACCCTCCGTCATCATCAACGCCTAGGGTTGATTCAATGAGCAAAGCCATTGCACAATACGCAGTTGATGCTAGATTACACGCTGTTTATGA...

Protein

Download Protein FASTA

1160 aa · TkA08G168340|TK1151|PROTEIN

MQPNLTLNQHPKSTTSIYKPHHSLRVIFHPQFRIHSRFIAMASGSKASSGFNPQSQNPPSSSTPRVDSMSKAIAQYAVDARLHAVYEQSGESGKSFDYSQSIKTATDSIAEQQMTAYLSKIQRGGHIQPFGCMIAIDNSSFRVIAFSENARERLGLAPQSVPSLERPEILTIGTDVKTLFTPSSAVLLERAFRAREITLLNPVWVHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISNLQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G168340
TK1151 IDTkA08G168340
OH-1004 IDLXL04_032340
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G168340
LocationChr08:43995797-44001114 (-)
DescriptionSimilar to PHYB: Phytochrome B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18790 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis.2002 · DOI: 10.1104/pp.003418
Phytochromes function as thermosensors in Arabidopsis.2016 · DOI: 10.1126/science.aaf6005
Daytime temperature is sensed by phytochrome B in Arabidopsis through a transcriptional activator HEMERA.2019 · DOI: 10.1038/s41467-018-08059-z
PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.2020 · DOI: 10.1105/tpc.19.00515

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032340 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006325 chromatin organization Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009266 response to temperature stimulus Biological Process
GO:0009408 response to heat Biological Process
GO:0009409 response to cold Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009584 detection of visible light Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0009630 gravitropism Biological Process
GO:0009638 phototropism Biological Process
GO:0009640 photomorphogenesis Biological Process
KEGG gene cross-reference
ath:AT2G18790
gmx:100794865
sly:101262847
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.416
Rank 1 · TkA08G168340 · TK1151
Cytoplasm0.198
Rank 2 · TkA08G168340 · TK1151
Mitochondrion0.145
Rank 3 · TkA08G168340 · TK1151
Nucleus0.129
Rank 4 · TkA08G168340 · TK1151
Cell membrane0.099
Rank 5 · TkA08G168340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26511DUF817268-115 aa
PF08446PAS_2116-232 aa
PF13188PAS_8131-157 aa
PF13426PAS_9132-218 aa
PF08448PAS_4133-160 aa
PF01590GAF266-443 aa
PF00360PHY456-631 aa
PF08447PAS_3491-526 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G168340PF26511DUF8172681150.410.7
TkA08G168340PF08446PAS_21162329.7e-38129.9
TkA08G168340PF13188PAS_81311570.0003221.2
TkA08G168340PF13426PAS_91322182.4e-1041.3
TkA08G168340PF08448PAS_41331602.5e-1041.3
TkA08G168340PF01590GAF2664433.5e-1763.9
TkA08G168340PF00360PHY4566314e-57193.2
TkA08G168340PF08447PAS_34915260.0001123.2
TkA08G168340PF00989PAS6617767.3e-47158.8
TkA08G168340PF13188PAS_86647100.0003221.2
TkA08G168340PF08448PAS_46697802.5e-1041.3
TkA08G168340PF13426PAS_96737772.4e-1041.3
TkA08G168340PF08447PAS_36857400.0001123.2
TkA08G168340PF08446PAS_27167519.7e-38129.9
TkA08G168340PF02518HATPase_c7177524.4e-1660.0
TkA08G168340PF00989PAS7929117.3e-47158.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P14713Arabidopsis thalianasp|P14713|PHYB_ARATH Phytochrome B77.200%Swiss-ProtHigh

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