RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G164130
Reference: TK1151 Chr: Chr08 Coordinates: 42870335-42872395 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

999 bp · TkA08G164130|TK1151|cDNA

AAAACTCACGGTTCTCAAACGTCCACTTTCCTTCACTCAAACCCCTTCCAACTAATAAATACTACGCCTACTCTCTCTGCATCGCAAATTTCATCGGTGATCGCCGGCTCTCCCACTCCATACAAAGATGGGGTTGACCTTCACCAAGCTTTTCAGTCGCCTTTTTGCTAAAAAGGAGATGCGCATTTTGATGGTTGGTCTCGATGCAGCTGGTAAAACTACCATTTTGTACAAGCTCAAATTGGGGGAGATCGTTACCA...

CDS

Download CDS FASTA

546 bp · TkA08G164130|TK1151|CDS

ATGGGGTTGACCTTCACCAAGCTTTTCAGTCGCCTTTTTGCTAAAAAGGAGATGCGCATTTTGATGGTTGGTCTCGATGCAGCTGGTAAAACTACCATTTTGTACAAGCTCAAATTGGGGGAGATCGTTACCACTATTCCAACCATTGGATTCAATGTGGAAACTGTTGAGTACAAGAACATCAGCTTTACTGTATGGGATGTTGGTGGTCAAGACAAGATTCGCCCCTTGTGGAGGCACTACTTCCAAAACACACAGGG...

Protein

Download Protein FASTA

181 aa · TkA08G164130|TK1151|PROTEIN

MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G164130
TK1151 IDTkA08G164130
OH-1004 IDLXL04_032304
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 99.448 / OH-1004 93.750
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G164130
LocationChr08:42870335-42872395 (-)
DescriptionSimilar to ARF: ADP-ribosylation factor 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g23490 GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0489600 GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. No verified direct reference in this release
Os01g0813400 GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032304 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0003925 G protein activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0016004 phospholipase activator activity Molecular Function
KEGG gene cross-reference
dosa:Os01g0813400
zma:732812
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.485
Rank 1 · TkA08G164130 · TK1151
Cytoplasm0.373
Rank 2 · TkA08G164130 · TK1151
Endoplasmic reticulum0.196
Rank 3 · TkA08G164130 · TK1151
Cell membrane0.154
Rank 4 · TkA08G164130 · TK1151
Lysosome / Vacuole0.135
Rank 5 · TkA08G164130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf5-177 aa
PF015916PF2K13-55 aa
PF00503G-alpha14-39 aa
PF09439SRPRB16-143 aa
PF08477Roc19-129 aa
PF00071Ras19-175 aa
PF04670Gtr1_RagA19-141 aa
PF01926MMR_HSR119-122 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G164130PF00025Arf51772.5e-81272.0
TkA08G164130PF015916PF2K13550.008416.2
TkA08G164130PF00503G-alpha14392.9e-1350.4
TkA08G164130PF09439SRPRB161433.7e-1350.0
TkA08G164130PF08477Roc191297.1e-1452.8
TkA08G164130PF00071Ras191754.1e-1246.7
TkA08G164130PF04670Gtr1_RagA191411.6e-0938.3
TkA08G164130PF01926MMR_HSR1191226.6e-0523.7
TkA08G164130PF00009GTP_EFTU20370.02415.0
TkA08G164130PF19993DO-GTPase222370.04614.1
TkA08G164130PF00503G-alpha451112.9e-1350.4
TkA08G164130PF00009GTP_EFTU481440.02415.0
TkA08G164130PF18885DUF5648481020.212.6
TkA08G164130PF015916PF2K801270.008416.2
TkA08G164130PF21875CAPN13-like_C_EFh801260.2711.9
TkA08G164130PF19993DO-GTPase2821520.04614.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQC8Arabidopsis thalianasp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A97.800%Swiss-ProtHigh
P51823Oryza sativa subsp. japonicasp|P51823|ARF2_ORYSJ ADP-ribosylation factor 298.900%Swiss-ProtHigh
Q06396Oryza sativa subsp. japonicasp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 198.300%Swiss-ProtHigh

JBrowse

View in Genome Browser