Gene Card
Gene overview
cDNA / CDS / Protein Sequences
740 bp · LXL04_032304|LXL04_032304|OH1004|cDNA
ACTTGAAATTTTAAGCTTTCATTAACATTCCGTAAATTAGATCGTAGTCTTGATCCCTTTTCGTTTGTGAGAGCTCTCCAAAAATGTGATCACCTTACTGAGTATAAGCACTAGTTACGATCTGATAAGTACATTAAAGATTCCCGTGGTTCTTTTTCTATTTGCTAGATACAAAGATGGGGTTGACCTTCACCAAGCTTTTCAGTCGCCTTTTTGCTAAAAAGGAGATGCGCATTTTGATGGTTGGTCTCGATGCAGCT...
579 bp · LXL04_032304|LXL04_032304|OH1004|CDS
TTGCTAGATACAAAGATGGGGTTGACCTTCACCAAGCTTTTCAGTCGCCTTTTTGCTAAAAAGGAGATGCGCATTTTGATGGTTGGTCTCGATGCAGCTGGTAAAACTACCATTTTGTACAAGCTCAAATTGGGGGAGATCGTTACCACTATTCCAACCATTGGATTCAATGTGGAAACTGTTGAGTACAAGAACATCAGCTTTACTGTATGGGATGTTGGTGGTCAAGACAAGATTCGCCCCTTGTGGAGGCACTACTT...
Protein
Download Protein FASTA192 aa · LXL04_032304|LXL04_032304|OH1004|PROTEIN
MLDTKMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVNRIFNK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_032304 |
|---|---|
| TK1151 ID | TkA08G164130 |
| OH-1004 ID | LXL04_032304 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 99.448 / OH-1004 93.750Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_032304 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:20086822-20088005 (-) | |||||||||
| Description | Similar to ARF: ADP-ribosylation factor 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0015031 protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0003924 GTPase activity Molecular Function GO:0003925 G protein activity Molecular Function GO:0005525 GTP binding Molecular Function GO:0016004 phospholipase activator activity Molecular Function | |||||||||
| KEGG gene cross-reference | dosa:Os01g0813400 zma:732812 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00025.28Arf10-182 aaPF09439.17SRPRB21-148 aaPF08477.20Roc24-134 aaPF00071.29Ras24-180 aaPF04670.19Gtr1_RagA24-146 aaPF00503.27G-alpha50-116 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_032304 | PF00025.28 | Arf | 10 | 182 | 3.1e-81 | 271.7 |
| LXL04_032304 | PF09439.17 | SRPRB | 21 | 148 | 4.3e-13 | 49.7 |
| LXL04_032304 | PF08477.20 | Roc | 24 | 134 | 8.1e-14 | 52.6 |
| LXL04_032304 | PF00071.29 | Ras | 24 | 180 | 4.8e-12 | 46.5 |
| LXL04_032304 | PF04670.19 | Gtr1_RagA | 24 | 146 | 1.8e-09 | 38.1 |
| LXL04_032304 | PF00503.27 | G-alpha | 50 | 116 | 3.2e-13 | 50.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.