TkA08G161160 | RubberDandelionOmics

Gene overview

TkA08G161160

Reference: TK1151 Chr: Chr08 Coordinates: 42052582-42053220 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

639 bp · TkA08G161160|TK1151|cDNA

ATGAAACTAACACCTACACTCTGTGATCTCTGCCATCAACAACCACCTTCTTTCTACTGTTCTTCCGACTCCGCTTTCCTTTGCTCCGATTGCGATTTTCAGGTTCACGCCGCCAACTTCCTCGTCGCCCGTCACATCCGCCTCTCCCTTTGCTCCCACTGCAAATCGTTCCATGATCACACTTCCAGTACTTCTTCATCTTCATCATCATCTTCATCTTCCTCTTCGTCGGCTTCATGTATCTCGAGTAACACCTGCAA...

CDS

Download CDS FASTA

639 bp · TkA08G161160|TK1151|CDS

ATGAAACTAACACCTACACTCTGTGATCTCTGCCATCAACAACCACCTTCTTTCTACTGTTCTTCCGACTCCGCTTTCCTTTGCTCCGATTGCGATTTTCAGGTTCACGCCGCCAACTTCCTCGTCGCCCGTCACATCCGCCTCTCCCTTTGCTCCCACTGCAAATCGTTCCATGATCACACTTCCAGTACTTCTTCATCTTCATCATCATCTTCATCTTCCTCTTCGTCGGCTTCATGTATCTCGAGTAACACCTGCAA...

Protein

Download Protein FASTA

212 aa · TkA08G161160|TK1151|PROTEIN

MKLTPTLCDLCHQQPPSFYCSSDSAFLCSDCDFQVHAANFLVARHIRLSLCSHCKSFHDHTSSTSSSSSSSSSSSSSASCISSNTCKITSVISDWKTRDVLENWCARIGVGGGVIEVATLAFESWLANRWVWPYRVGLAASLWMGLLRFTKDDEKKKIKMRGLLRKLEEISGVPARSIVVAESKLASVLKTMKHRRGQQDQAEAAEEGWAEC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G161160`
TK1151 ID	TkA08G161160
OH-1004 ID	LXL04_032248
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 71.622 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G161160

Location Chr08:42052582-42053220 (-)

Description Similar to BBX32: B-box zinc finger protein 32

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15850`	Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010099 regulation of photomorphogenesis Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT2G24790

ath:AT3G21150

ath:AT4G15248

ath:AT5G15850

dosa:Os06g0275000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919

Rank 1 · TkA08G161160 · TK1151

Cytoplasm0.154

Rank 2 · TkA08G161160 · TK1151

Cell membrane0.027

Rank 3 · TkA08G161160 · TK1151

Endoplasmic reticulum0.020

Rank 4 · TkA08G161160 · TK1151

Mitochondrion0.014

Rank 5 · TkA08G161160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00130C1_14-37 aa

PF00643zf-B_box6-48 aa

PF16366CEBP_ZZ6-46 aa

PF22586ANCHR-like_BBOX7-37 aa

PF24734DUF76858-31 aa

PF00130C1_147-58 aa

PF00643zf-B_box49-60 aa

PF22586ANCHR-like_BBOX49-58 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G161160	`PF00130`	C1_1	4	37	0.077	13.6
TkA08G161160	`PF00643`	zf-B_box	6	48	1.4e-07	32.2
TkA08G161160	`PF16366`	CEBP_ZZ	6	46	3.9	8.5
TkA08G161160	`PF22586`	ANCHR-like_BBOX	7	37	0.029	15.2
TkA08G161160	`PF24734`	DUF7685	8	31	2.0	9.1
TkA08G161160	`PF00130`	C1_1	47	58	0.077	13.6
TkA08G161160	`PF00643`	zf-B_box	49	60	1.4e-07	32.2
TkA08G161160	`PF22586`	ANCHR-like_BBOX	49	58	0.029	15.2
TkA08G161160	`PF24734`	DUF7685	49	54	2.0	9.1
TkA08G161160	`PF16366`	CEBP_ZZ	49	57	3.9	8.5
TkA08G161160	`PF27961`	CSNKA2IP	61	84	0.11	12.7
TkA08G161160	`PF10500`	SR-25	61	84	8.7	6.6
TkA08G161160	`PF10500`	SR-25	155	161	8.7	6.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O50055`	Arabidopsis thaliana	sp\|O50055\|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1	56.100%	Swiss-Prot	Low

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