LXL04_032248 | RubberDandelionOmics

Gene overview

LXL04_032248

Reference: OH-1004 Chr: Chr07 Coordinates: 19159121-19165649 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

891 bp · LXL04_032248|LXL04_032248|OH1004|cDNA

ATGGAAAATGTGGGAAATCAATTGGGGTTCCCAGTGAAGTCAGTTGAGTGTCTGAATTATTGGGAATGGAGGTCACATGAGCAAAAATGTGAACCACACACGTTGGAATTATTATTTGGGGTCTGGCAACCACCAGTTTCTCCGCCTCTTTCGCCTCCTTTTCTCACCATTCCTCTTTTTCCTATATATTTCCAAACCTCCATGCATATTTCATCATCATTCGAACTTATAATACTTGTATACATTTTAACCATGAAACT...

CDS

Download CDS FASTA

891 bp · LXL04_032248|LXL04_032248|OH1004|CDS

ATGGAAAATGTGGGAAATCAATTGGGGTTCCCAGTGAAGTCAGTTGAGTGTCTGAATTATTGGGAATGGAGGTCACATGAGCAAAAATGTGAACCACACACGTTGGAATTATTATTTGGGGTCTGGCAACCACCAGTTTCTCCGCCTCTTTCGCCTCCTTTTCTCACCATTCCTCTTTTTCCTATATATTTCCAAACCTCCATGCATATTTCATCATCATTCGAACTTATAATACTTGTATACATTTTAACCATGAAACT...

Protein

Download Protein FASTA

296 aa · LXL04_032248|LXL04_032248|OH1004|PROTEIN

MENVGNQLGFPVKSVECLNYWEWRSHEQKCEPHTLELLFGVWQPPVSPPLSPPFLTIPLFPIYFQTSMHISSSFELIILVYILTMKLTPTLCDLCHQQPPSFYCSSDSAFLCSDCDFQVHAANFLVARHIRLSLCSHCKSFHDHTSSTSSSSSSSSSSSSSASCISSNTCKITSVISDWKTRDVLENWCARIGVGGGVIEVATLAFESWLANRWVWPYRVGLAASLWMGLLRFTKDDEKKKIKMRGLLRKLEEISGVPAR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_032248`
TK1151 ID	TkA08G161160
OH-1004 ID	LXL04_032248
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 71.622 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_032248

Location Chr07:19159121-19165649 (-)

Description Similar to BBX32: B-box zinc finger protein 32

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g21150`	Repressor of light-mediated regulation of seedling development.	BBX32, an Arabidopsis B-Box protein, functions in light signaling by suppressing HY5-regulated gene expression and interacting with STH2/BBX21.2011 · DOI: 10.1104/pp.111.177139
`At5g15850`	Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.	No verified direct reference in this release
`At2g24790`	Zinc finger protein CONSTANS-LIKE 3.	No verified direct reference in this release
`At4g15248`	Developmental regulator acting by forming heterodimeric complexes, that sequester CO and CO-like (COL) proteins into non-functional complexes.	MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis.2016 · DOI: 10.1371/journal.pgen.1005959

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0275000`	Probable transcription factor involved in the regulation of flower development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032248 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009785 blue light signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010017 red or far-red light signaling pathway Biological Process

GO:0010099 regulation of photomorphogenesis Biological Process

GO:0010161 red light signaling pathway Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT2G24790

ath:AT3G21150

ath:AT4G15248

ath:AT5G15850

dosa:Os06g0275000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.806

Rank 1 · LXL04_032248 · OH-1004

Cytoplasm0.240

Rank 2 · LXL04_032248 · OH-1004

Endoplasmic reticulum0.045

Rank 3 · LXL04_032248 · OH-1004

Cell membrane0.045

Rank 4 · LXL04_032248 · OH-1004

Mitochondrion0.024

Rank 5 · LXL04_032248 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00643.30zf-B_box90-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_032248	`PF00643.30`	zf-B_box	90	132	2.4e-07	31.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LJB7`	Arabidopsis thaliana	B-box zinc finger protein 32	28.512%	Swiss-Prot	weak database homology
`O50055`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 1	52.083%	Swiss-Prot	weak database homology
`Q9SK53`	Arabidopsis thaliana	Zinc finger protein CONSTANS-LIKE 3	36.232%	Swiss-Prot	weak database homology
`Q1G3I2`	Arabidopsis thaliana	B-box domain protein 30	45.283%	Swiss-Prot	weak database homology
`Q9FDX8`	Oryza sativa subsp. japonica	Zinc finger protein HD1	45.833%	Swiss-Prot	weak database homology

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