TkA08G159580 | RubberDandelionOmics

Gene overview

TkA08G159580

Reference: TK1151 Chr: Chr08 Coordinates: 41597917-41599889 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1143 bp · TkA08G159580|TK1151|cDNA

ATCAAAAGGACTTAGGCAACAAAGTATAGGGGGTGTTAATGCAACTCAAGTAAATCTTCGATATAAGATAACGGACAGAAGCCAAAAGTCAGCTACAGAAGAACCAGGGCCATGGCGGTCTTTCCTCCCGCCATTTCAGTCTCGCCGTCGTACACCTATTATCCCATAACGCCACTCCTACCTTCCACCATCTCCGTCCGTCAAATACATTCCAGCTCTTTTCAATTAAAGTGTTTTGGGTTGCACGGCGGTTTCGATGT...

CDS

Download CDS FASTA

846 bp · TkA08G159580|TK1151|CDS

ATGGCGGTCTTTCCTCCCGCCATTTCAGTCTCGCCGTCGTACACCTATTATCCCATAACGCCACTCCTACCTTCCACCATCTCCGTCCGTCAAATACATTCCAGCTCTTTTCAATTAAAGTGTTTTGGGTTGCACGGCGGTTTCGATGTCGACCGATATAACCAAAACTCCAAAATGCACTGGGACGAATTCTACGAGCGCCATCAAAACAAGTTTTTCAAGGATCGACATTACCTGGAGAAGGATTGGGGGCAATATTT...

Protein

Download Protein FASTA

281 aa · TkA08G159580|TK1151|PROTEIN

MAVFPPAISVSPSYTYYPITPLLPSTISVRQIHSSSFQLKCFGLHGGFDVDRYNQNSKMHWDEFYERHQNKFFKDRHYLEKDWGQYFCNDNTIILEAGCGAGNSAFPLMKKYPQLYVHACDFSHHAINLVKSHEKFSEDQMNAFVCNITEDDLCDHIKPASLDIATLIFTLSAVCPEKMPTVIQNLRRVLKPNGHVLLRDYAIGDYAQTMLMSKNQVISENFYFRGDGTSSFYFSEDFLSEMFVKSGFTVVDVNTYTREI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G159580`
TK1151 ID	TkA08G159580
OH-1004 ID	LXL04_032209
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 62.306 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G159580`
Location	Chr08:41597917-41599889 (-)
Description	Similar to METTL6: tRNA N(3)-methylcytidine methyltransferase METTL6
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032209` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006400 tRNA modification Biological Process GO:0030488 tRNA methylation Biological Process GO:0106217 tRNA C3-cytosine methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0043527 tRNA methyltransferase complex Cellular Component GO:0019899 enzyme binding Molecular Function GO:0052735 tRNA (cytidine-3-)-methyltransferase activity Molecular Function
KEGG gene cross-reference	hsa:131965 mmu:67011 pon:100171853 rno:290564 spo:2541032 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.401

Rank 1 · TkA08G159580 · TK1151

Nucleus0.305

Rank 2 · TkA08G159580 · TK1151

Mitochondrion0.233

Rank 3 · TkA08G159580 · TK1151

Plastid0.095

Rank 4 · TkA08G159580 · TK1151

Peroxisome0.046

Rank 5 · TkA08G159580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13489Methyltransf_2388-252 aa

PF13847Methyltransf_3190-212 aa

PF02390Methyltransf_491-163 aa

PF01209Ubie_methyltran92-199 aa

PF00891Methyltransf_293-216 aa

PF13649Methyltransf_2594-194 aa

PF05175MTS94-164 aa

PF08242Methyltransf_1295-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G159580	`PF13489`	Methyltransf_23	88	252	3e-12	47.3
TkA08G159580	`PF13847`	Methyltransf_31	90	212	9.8e-11	42.3
TkA08G159580	`PF02390`	Methyltransf_4	91	163	0.14	12.3
TkA08G159580	`PF01209`	Ubie_methyltran	92	199	2.6e-05	24.4
TkA08G159580	`PF00891`	Methyltransf_2	93	216	0.00095	19.3
TkA08G159580	`PF13649`	Methyltransf_25	94	194	4.2e-13	50.5
TkA08G159580	`PF05175`	MTS	94	164	1.8e-05	25.1
TkA08G159580	`PF08242`	Methyltransf_12	95	196	8.3e-15	56.0
TkA08G159580	`PF08241`	Methyltransf_11	95	197	7.1e-11	43.3
TkA08G159580	`PF10957`	Spore_Cse60	131	155	0.11	13.3
TkA08G159580	`PF01234`	NNMT_PNMT_TEMT	139	199	0.13	12.1
TkA08G159580	`PF02390`	Methyltransf_4	180	211	0.14	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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