TkA08G158480 | RubberDandelionOmics

Gene overview

TkA08G158480

Reference: TK1151 Chr: Chr08 Coordinates: 41265393-41265983 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

591 bp · TkA08G158480|TK1151|cDNA

ATGAATCAGATCATGGAACTGAAATTCACCGCGAAGAGCCTCCAACGCCAGGCCAGGAAGTGCGAAAAGGACGAGAAAACCGAGAAACTCAAAGTCAAGAAGGCAATCGAGAAAGGAAACATGGACGGAGCACGAATCTACGCCGAAAACGCAATCCGTAAGCGTAACGAACAGATGAATTACCTCCGTCTAGCCTCTCGCCTCGACGCCGTGGTCGCAAGGCTCGACACACAAGCCAAAATGAACACGATCAGCAAGTC...

CDS

Download CDS FASTA

591 bp · TkA08G158480|TK1151|CDS

ATGAATCAGATCATGGAACTGAAATTCACCGCGAAGAGCCTCCAACGCCAGGCCAGGAAGTGCGAAAAGGACGAGAAAACCGAGAAACTCAAAGTCAAGAAGGCAATCGAGAAAGGAAACATGGACGGAGCACGAATCTACGCCGAAAACGCAATCCGTAAGCGTAACGAACAGATGAATTACCTCCGTCTAGCCTCTCGCCTCGACGCCGTGGTCGCAAGGCTCGACACACAAGCCAAAATGAACACGATCAGCAAGTC...

Protein

Download Protein FASTA

196 aa · TkA08G158480|TK1151|PROTEIN

MNQIMELKFTAKSLQRQARKCEKDEKTEKLKVKKAIEKGNMDGARIYAENAIRKRNEQMNYLRLASRLDAVVARLDTQAKMNTISKSMGSIVKSLESTLATGNLQKMSETMDQFEQQFVNMEVQAEFMESSMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKTAEKVDEDDLSRRLAELKARG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G158480`
TK1151 ID	TkA08G158480
OH-1004 ID	LXL04_032172
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 96.552 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA08G158480

Location Chr08:41265393-41265983 (+)

Description Similar to CHMP1A: ESCRT-related protein CHMP1A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73030`	Involved in ESCRT-dependent multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs.	The ESCRT-related CHMP1A and B proteins mediate multivesicular body sorting of auxin carriers in Arabidopsis and are required for plant development.2009 · DOI: 10.1105/tpc.108.064865 The endosomal protein CHARGED MULTIVESICULAR BODY PROTEIN1 regulates the autophagic turnover of plastids in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135939
`At1g17730`	Involved in ESCRT-dependent multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs.	The ESCRT-related CHMP1A and B proteins mediate multivesicular body sorting of auxin carriers in Arabidopsis and are required for plant development.2009 · DOI: 10.1105/tpc.108.064865 The endosomal protein CHARGED MULTIVESICULAR BODY PROTEIN1 regulates the autophagic turnover of plastids in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135939

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0643300`	Involved in ESCRT-dependent multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032172 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000578 embryonic axis specification Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006623 protein targeting to vacuole Biological Process

GO:0006914 autophagy Biological Process

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0015031 protein transport Biological Process

GO:0031468 nuclear membrane reassembly Biological Process

GO:0032509 endosome transport via multivesicular body sorting pathway Biological Process

GO:0039702 viral budding via host ESCRT complex Biological Process

GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process

GO:0045324 late endosome to vacuole transport Biological Process

KEGG gene cross-reference

ath:AT1G17730

ath:AT1G73030

ddi:DDB_G0267394

dosa:Os06g0643300

pon:100173638

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.861

Rank 1 · TkA08G158480 · TK1151

Nucleus0.240

Rank 2 · TkA08G158480 · TK1151

Cell membrane0.088

Rank 3 · TkA08G158480 · TK1151

Mitochondrion0.062

Rank 4 · TkA08G158480 · TK1151

Endoplasmic reticulum0.048

Rank 5 · TkA08G158480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03357Snf74-167 aa

PF23005DUF70325-33 aa

PF03398Ist16-158 aa

PF01025GrpE6-120 aa

PF22085NorB_cytochrome_c-like11-56 aa

PF01725Ham1p_like47-51 aa

PF11101DUF288448-126 aa

PF22085NorB_cytochrome_c-like49-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G158480	`PF03357`	Snf7	4	167	1.3e-14	55.0
TkA08G158480	`PF23005`	DUF7032	5	33	0.7	10.4
TkA08G158480	`PF03398`	Ist1	6	158	0.00015	22.4
TkA08G158480	`PF01025`	GrpE	6	120	1.6	9.1
TkA08G158480	`PF22085`	NorB_cytochrome_c-like	11	56	1.4	10.0
TkA08G158480	`PF01725`	Ham1p_like	47	51	0.081	13.5
TkA08G158480	`PF11101`	DUF2884	48	126	0.055	13.8
TkA08G158480	`PF22085`	NorB_cytochrome_c-like	49	106	1.4	10.0
TkA08G158480	`PF23005`	DUF7032	62	80	0.7	10.4
TkA08G158480	`PF23005`	DUF7032	83	114	0.7	10.4
TkA08G158480	`PF22085`	NorB_cytochrome_c-like	93	159	1.4	10.0
TkA08G158480	`PF01725`	Ham1p_like	98	192	0.081	13.5
TkA08G158480	`PF03357`	Snf7	175	193	1.3e-14	55.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSM4`	Arabidopsis thaliana	sp\|Q9SSM4\|CHM1B_ARATH ESCRT-related protein CHMP1B	90.300%	Swiss-Prot	High
`Q8LE58`	Arabidopsis thaliana	sp\|Q8LE58\|CHM1A_ARATH ESCRT-related protein CHMP1A	88.300%	Swiss-Prot	High
`Q84VG1`	Oryza sativa subsp. japonica	sp\|Q84VG1\|CHMP1_ORYSJ ESCRT-related protein CHMP1	85.900%	Swiss-Prot	High

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