TkA08G148040 | RubberDandelionOmics

Gene overview

TkA08G148040

Reference: TK1151 Chr: Chr08 Coordinates: 38577749-38578387 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

441 bp · TkA08G148040|TK1151|cDNA

ATGGAAGAGGTGAGAGATAGGTTACCTTGTGCGATGGAGACGACGACCTTCAGATTTTGTTTGGATTCTGTGATTTCGCCTTGGAAAGACCACTTGGAAAGCGAAAATCTTTCCGGTTCAAAACGATCAACGAACGAAGGGGGGAGCTCACAACAATCCGACGGGCGAACGTTCATCGACATAAACGATGAAACGGGGGATAATGACCAACCAACACCTCGACCAATAGGAAGAGACCGAGCGAAAAAGAAAGCGGCAAA...

CDS

Download CDS FASTA

441 bp · TkA08G148040|TK1151|CDS

ATGGAAGAGGTGAGAGATAGGTTACCTTGTGCGATGGAGACGACGACCTTCAGATTTTGTTTGGATTCTGTGATTTCGCCTTGGAAAGACCACTTGGAAAGCGAAAATCTTTCCGGTTCAAAACGATCAACGAACGAAGGGGGGAGCTCACAACAATCCGACGGGCGAACGTTCATCGACATAAACGATGAAACGGGGGATAATGACCAACCAACACCTCGACCAATAGGAAGAGACCGAGCGAAAAAGAAAGCGGCAAA...

Protein

Download Protein FASTA

146 aa · TkA08G148040|TK1151|PROTEIN

MEEVRDRLPCAMETTTFRFCLDSVISPWKDHLESENLSGSKRSTNEGGSSQQSDGRTFIDINDETGDNDQPTPRPIGRDRAKKKAAKSTESASSVIDVFGDKFDRYVKLQEDRTETFNRMEREFVESQQSFKLKTDMEILKMRSED

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G148040`
TK1151 ID	TkA08G148040
OH-1004 ID	LXL04_024031
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	71.600
Protein coverage (%)	TK1151 45.890 / OH-1004 7.238 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA08G148040`
Location	Chr08:38577749-38578387 (+)
Description	Similar to MTP12: Metal tolerance protein 12
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024031` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006882 intracellular zinc ion homeostasis Biological Process GO:0030001 metal ion transport Biological Process GO:0071578 zinc ion import across plasma membrane Biological Process GO:1904257 zinc ion import into Golgi lumen Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0016020 membrane Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:1990674 Golgi cis cisterna membrane Cellular Component
KEGG gene cross-reference	ath:AT2G04620 bta:613851 dosa:Os08g0422200 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958

Rank 1 · TkA08G148040 · TK1151

Cytoplasm0.165

Rank 2 · TkA08G148040 · TK1151

Mitochondrion0.021

Rank 3 · TkA08G148040 · TK1151

Cell membrane0.014

Rank 4 · TkA08G148040 · TK1151

Extracellular0.009

Rank 5 · TkA08G148040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14303NAM-associated40-142 aa

PF13586DDE_Tnp_1_275-113 aa

PF13586DDE_Tnp_1_2117-143 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G148040	`PF14303`	NAM-associated	40	142	7.5e-05	24.3
TkA08G148040	`PF13586`	DDE_Tnp_1_2	75	113	0.036	15.2
TkA08G148040	`PF13586`	DDE_Tnp_1_2	117	143	0.036	15.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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