TkA08G133750 | RubberDandelionOmics

Gene overview

TkA08G133750

Reference: TK1151 Chr: Chr08 Coordinates: 34760935-34764005 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1753 bp · TkA08G133750|TK1151|cDNA

GAAGCGCCCCTGACACTTAACCGGCTGAACCACCACCCAGAATTTGCCGAGAGCGACGGCGGATGGCAGAGGAGGAGAAAGGGGAATTTACAGATGGCGGAAACCGAAGAACACCATTCTCAAGAAAATGAAGATTCATTTCAATGGGATGAACAGTCACAGTTGTATTACCATGCCAGTAGTGGATTCTATCATGATCCAGCTGCCGGCTGGTATTACAGCAGCAACGATGGTCTGTATTACAAATTCGAAAATGGAAG...

CDS

Download CDS FASTA

1560 bp · TkA08G133750|TK1151|CDS

GAAGCGCCCCTGACACTTAACCGGCTGAACCACCACCCAGAATTTGCCGAGAGCGACGGCGGATGGCAGAGGAGGAGAAAGGGGAATTTACAGATGGCGGAAACCGAAGAACACCATTCTCAAGAAAATGAAGATTCATTTCAATGGGATGAACAGTCACAGTTGTATTACCATGCCAGTAGTGGATTCTATCATGATCCAGCTGCCGGCTGGTATTACAGCAGCAACGATGGTCTGTATTACAAATTCGAAAATGGAAG...

Protein

Download Protein FASTA

519 aa · TkA08G133750|TK1151|PROTEIN

EAPLTLNRLNHHPEFAESDGGWQRRRKGNLQMAETEEHHSQENEDSFQWDEQSQLYYHASSGFYHDPAAGWYYSSNDGLYYKFENGSYVPWETDQADESNANQDIVTVGDKSDHDQSYKHAPCNTDTNDLKLEDGEIEGYVVEESTPNEPTVDTDSFTNGLPENLPPPSEWLEDTLIELYLSNYSNKTTNTASGTMPLDDDTGSNPPANGILDNDNDYELEEGEWVPDDNHEIADGNAVASDEDPFGDEEMWRAQYGQTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G133750`
TK1151 ID	TkA08G133750
OH-1004 ID	LXL04_031878
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 96.317 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA08G133750`
Location	Chr08:34760935-34764005 (-)
Description	Similar to SUA: SUPPRESSOR OF ABI3-5
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_031878` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006397 mRNA processing Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0003723 RNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	ath:AT3G54230 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.828

Rank 1 · TkA08G133750 · TK1151

Cytoplasm0.249

Rank 2 · TkA08G133750 · TK1151

Cell membrane0.038

Rank 3 · TkA08G133750 · TK1151

Mitochondrion0.027

Rank 4 · TkA08G133750 · TK1151

Endoplasmic reticulum0.022

Rank 5 · TkA08G133750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17780OCRE47-91 aa

PF03969AFG1_ATPase315-375 aa

PF12656G-patch_2462-509 aa

PF01585G-patch469-507 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G133750	`PF17780`	OCRE	47	91	1.4e-08	35.3
TkA08G133750	`PF03969`	AFG1_ATPase	315	375	0.013	15.3
TkA08G133750	`PF12656`	G-patch_2	462	509	1.5e-05	25.7
TkA08G133750	`PF01585`	G-patch	469	507	6.5e-11	42.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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