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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G131150
Reference: TK1151 Chr: Chr08 Coordinates: 34037831-34042630 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1977 bp · TkA08G131150|TK1151|cDNA

CCTCACTCGGGGCCCATGCTTTCCTGTGCAGTAAAGGCTCCGGTTGTAAATTACAATATTACCCATGTTTTATATACGTGGCAGCAGCAATCTATAAACCAAAGGACAAAGGAGGAAAAAAGATAGCAAGAAACCCTGAGGGGAAGAGTTTGTCGTCTCATAGAGATTAAACATAAACATGATGAGGTTGTTGAGTTTGGAGATGTCGCCGAAATAGAAAACCAGAGAAGAAACAGGTCCTTCCTCACTCCTCCTTCCTC...

CDS

Download CDS FASTA

1356 bp · TkA08G131150|TK1151|CDS

ATGGATAACACAGCCCTTTACGCTTCTTCTCAAAAGCTAGTATTAGGTTTTACTACAAACCCTCGAACCGATGGTTTAATCACCAATAAACCCTTGTTTTGCTCGTTCAAACTCCCAAAGAGAAGCGGCGTGCTCTCCAAATCCACAACTTCAATCTCCGCCGTGTCTCAGCCGCAAGGCTCAACCCCAAGAGCAATTGATAAATCAAATGAGAGGCTCGGGAAGGACTGTTTTGCTAGAATTTCTCCTTCAAGCAACCA...

Protein

Download Protein FASTA

451 aa · TkA08G131150|TK1151|PROTEIN

MDNTALYASSQKLVLGFTTNPRTDGLITNKPLFCSFKLPKRSGVLSKSTTSISAVSQPQGSTPRAIDKSNERLGKDCFARISPSSNQQTSSVGTPQIAVPPPSSQVGSPLFWIGVGVAFSAAFSMAASFLKKYAMQQAFKTMMGQMDSQNNQFTNSNSGFSPGSPFPFPPPQMPGSTATSSPFPFPTPPPPPSTATSGPASQRTVTVDMPPTKTESPPASKTSIDDLEPPKEPKKSAFVDVSPEETLKTSPFENFKESYD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G131150
TK1151 IDTkA08G131150
OH-1004 IDLXL04_031813
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G131150
LocationChr08:34037831-34042630 (-)
DescriptionSimilar to TIC40: Protein TIC 40, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g16620 Involved in protein precursor import into chloroplasts.
Tic40, a membrane-anchored co-chaperone homolog in the chloroplast protein translocon.2003 · DOI: 10.1093/emboj/cdg281
In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import.2005 · DOI: 10.1111/j.1365-313x.2004.02307.x
Functional similarity between the chloroplast translocon component, Tic40, and the human co-chaperone, Hsp70-interacting protein (Hip).2007 · DOI: 10.1074/jbc.m611545200

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031813 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009658 chloroplast organization Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0031897 Tic complex Cellular Component
KEGG gene cross-reference
ath:AT5G16620
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.950
Rank 1 · TkA08G131150 · TK1151
Mitochondrion0.058
Rank 2 · TkA08G131150 · TK1151
Nucleus0.035
Rank 3 · TkA08G131150 · TK1151
Cytoplasm0.034
Rank 4 · TkA08G131150 · TK1151
Peroxisome0.015
Rank 5 · TkA08G131150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29073RxLR_C125-157 aa
PF17898GerD128-145 aa
PF17830STI1-HOP_DP135-147 aa
PF16550RPN13_C300-374 aa
PF05952ComX304-319 aa
PF17898GerD305-369 aa
PF17830STI1-HOP_DP307-350 aa
PF05952ComX336-348 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G131150PF29073RxLR_C1251575.28.2
TkA08G131150PF17898GerD1281450.02315.4
TkA08G131150PF17830STI1-HOP_DP1351477.7e-1245.7
TkA08G131150PF16550RPN13_C3003743.6e-0627.8
TkA08G131150PF05952ComX3043190.9910.4
TkA08G131150PF17898GerD3053690.02315.4
TkA08G131150PF17830STI1-HOP_DP3073507.7e-1245.7
TkA08G131150PF05952ComX3363480.9910.4
TkA08G131150PF29073RxLR_C3373535.28.2
TkA08G131150PF29073RxLR_C3733995.28.2
TkA08G131150PF17830STI1-HOP_DP3894407.7e-1245.7
TkA08G131150PF05952ComX3904110.9910.4
TkA08G131150PF17898GerD4004150.02315.4
TkA08G131150PF29073RxLR_C4024365.28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FMD5Arabidopsis thalianasp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic50.500%Swiss-ProtHigh

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