Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2497 bp · TkA08G130570|TK1151|cDNA
ATATAACATGACCCTGAATCATCCCAGGGGAAGAAACAGAAGAGACTACTTTGCACCTATCATACGAACGAACCCTTACTGAAACCCTAGAAACTCGGATCTACTCTGCGATGGGGGACGAAGAGGTTATGGGCTCAGCAAGCCCTGCTCCGTCGGATCACAAGCGGAAGCTCGATGAATTGGATAGCGAACCGTTCGAGCAACAACCTGCTTCCGCCGAGGCCAATGGCAATTCACAGTCGCCCGACGGTGACGGTGAC...
2166 bp · TkA08G130570|TK1151|CDS
ATGGGGGACGAAGAGGTTATGGGCTCAGCAAGCCCTGCTCCGTCGGATCACAAGCGGAAGCTCGATGAATTGGATAGCGAACCGTTCGAGCAACAACCTGCTTCCGCCGAGGCCAATGGCAATTCACAGTCGCCCGACGGTGACGGTGACGGTGATGGTGAGGGAGAAGGAGACGGTGATGCTGCTTCTAACGAAGATCCAGACGTGAAACGACCTCGTCTAGAGGACAATTCAGACGGTTCTGAAGGTACAGAGAATGG...
Protein
Download Protein FASTA721 aa · TkA08G130570|TK1151|PROTEIN
MGDEEVMGSASPAPSDHKRKLDELDSEPFEQQPASAEANGNSQSPDGDGDGDGEGEGDGDAASNEDPDVKRPRLEDNSDGSEGTENGHQEETVEEEKEDITEHSDSMKNTELEENEEKSDEPLDPVNQESLNDEPQANSVEPQAAENPIESPKEDNQEYGADYPDPTPDAGLQEDEYDLKEQSTSSDQLTSRRMEVPSNKVGVLIGKGGDTIRTLQYSSGARIQITRDSEADPDALTRNVELIGSLENINKAERLIKDVI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G130570 |
|---|---|
| TK1151 ID | TkA08G130570 |
| OH-1004 ID | LXL04_031793 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 90.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G130570 |
|---|---|
| Location | Chr08:33874716-33879566 (-) |
| Description | Similar to FUBP1: Far upstream element-binding protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0048103 somatic stem cell division Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function GO:0003697 single-stranded DNA binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003730 mRNA 3'-UTR binding Molecular Function |
| KEGG gene cross-reference | hsa:8880 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13083KH_KhpA-B185-217 aaPF00013KH_1192-258 aaPF26594KH_NusA_2nd193-231 aaPF07650KH_2198-229 aaPF13184KH_NusA_1st199-224 aaPF22675KH-I_KHDC4-BBP200-226 aaPF22891KH_PNO1_2nd200-265 aaPF21800KH_KRR1_2nd204-261 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G130570 | PF13083 | KH_KhpA-B | 185 | 217 | 9.9e-10 | 38.9 |
| TkA08G130570 | PF00013 | KH_1 | 192 | 258 | 9.4e-35 | 118.9 |
| TkA08G130570 | PF26594 | KH_NusA_2nd | 193 | 231 | 0.027 | 15.0 |
| TkA08G130570 | PF07650 | KH_2 | 198 | 229 | 1.6e-08 | 35.0 |
| TkA08G130570 | PF13184 | KH_NusA_1st | 199 | 224 | 0.22 | 12.5 |
| TkA08G130570 | PF22675 | KH-I_KHDC4-BBP | 200 | 226 | 1e-05 | 26.0 |
| TkA08G130570 | PF22891 | KH_PNO1_2nd | 200 | 265 | 0.0037 | 17.8 |
| TkA08G130570 | PF21800 | KH_KRR1_2nd | 204 | 261 | 0.16 | 12.7 |
| TkA08G130570 | PF23248 | KH_PARP14_2 | 232 | 263 | 0.19 | 12.3 |
| TkA08G130570 | PF23050 | KH_N4BP1_1st | 233 | 259 | 0.2 | 12.5 |
| TkA08G130570 | PF24471 | KH_DEAH11 | 239 | 261 | 0.15 | 12.4 |
| TkA08G130570 | PF13083 | KH_KhpA-B | 286 | 313 | 9.9e-10 | 38.9 |
| TkA08G130570 | PF07650 | KH_2 | 287 | 321 | 1.6e-08 | 35.0 |
| TkA08G130570 | PF26594 | KH_NusA_2nd | 287 | 320 | 0.027 | 15.0 |
| TkA08G130570 | PF13184 | KH_NusA_1st | 287 | 322 | 0.22 | 12.5 |
| TkA08G130570 | PF00013 | KH_1 | 288 | 355 | 9.4e-35 | 118.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.