RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G130060
Reference: TK1151 Chr: Chr08 Coordinates: 33741305-33743060 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1378 bp · TkA08G130060|TK1151|cDNA

CGACGACGCATCCAGAAAGAGAGATAGGAGATGGGGGAAGTGGCGACCGACGATTATGAAGTTGTGATAATCGGAGCAGGGATTTGCGGATTAGCGACGGCCCTCGCTCTTCACAAGAAGGGAATTAAAAGCATAGTATTGGAGAGATCGGAAGCTCTGAGAAACATAACCGGTGCAGCAATCGGAATCCGCCAAAATGGTTGGCGAGCTTTGGATCAGCTTGGCGTCGGCGACATCCTCCGCCGCACTGCTATCAATAT...

CDS

Download CDS FASTA

1173 bp · TkA08G130060|TK1151|CDS

ATGGGGGAAGTGGCGACCGACGATTATGAAGTTGTGATAATCGGAGCAGGGATTTGCGGATTAGCGACGGCCCTCGCTCTTCACAAGAAGGGAATTAAAAGCATAGTATTGGAGAGATCGGAAGCTCTGAGAAACATAACCGGTGCAGCAATCGGAATCCGCCAAAATGGTTGGCGAGCTTTGGATCAGCTTGGCGTCGGCGACATCCTCCGCCGCACTGCTATCAATATGCAGAGGGAACGAATCGTAGACCTCGAGGG...

Protein

Download Protein FASTA

390 aa · TkA08G130060|TK1151|PROTEIN

MGEVATDDYEVVIIGAGICGLATALALHKKGIKSIVLERSEALRNITGAAIGIRQNGWRALDQLGVGDILRRTAINMQRERIVDLEGGNQQEMPLKGELRSLKRKELIDTLYAALPPATVKFGCELESIKLNPNTKKPVLQFIDGSSMMPKVVIGCEGGKSIVANFLNVKPTKMFPLCGVRGLSNYPNGHTFNQEFARFRKDNNLVGRIPIDTNLVYWFCARPYIPIDERIKEDPEAIRHSTVALLSDYPEELKEMIEIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G130060
TK1151 IDTkA08G130060
OH-1004 IDLXL04_031784
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.400
Protein coverage (%)TK1151 94.103 / OH-1004 31.565
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G130060
LocationChr08:33741305-33743060 (-)
DescriptionSimilar to MO1: Monooxygenase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g15760 Monooxygenase 1. No verified direct reference in this release
At4g38540 Monooxygenase 2. No verified direct reference in this release
At5g05320 Monooxygenase 3. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031784 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002239 response to oomycetes Biological Process
GO:0009620 response to fungus Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004497 monooxygenase activity Molecular Function
GO:0071949 FAD binding Molecular Function
KEGG gene cross-reference
ath:AT4G15760
ath:AT4G38540
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.320
Rank 1 · TkA08G130060 · TK1151
Cytoplasm0.195
Rank 2 · TkA08G130060 · TK1151
Peroxisome0.114
Rank 3 · TkA08G130060 · TK1151
Lysosome / Vacuole0.103
Rank 4 · TkA08G130060 · TK1151
Mitochondrion0.085
Rank 5 · TkA08G130060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01488Shikimate_DH7-40 aa
PF01494FAD_binding_38-342 aa
PF01946Thi49-42 aa
PF07992Pyr_redox_210-47 aa
PF03486HI0933_like10-43 aa
PF12831FAD_oxidored10-42 aa
PF01266DAO11-63 aa
PF00890FAD_binding_211-50 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G130060PF01488Shikimate_DH7400.1812.6
TkA08G130060PF01494FAD_binding_383421.7e-2487.5
TkA08G130060PF01946Thi49420.0004520.3
TkA08G130060PF07992Pyr_redox_210470.00119.3
TkA08G130060PF03486HI0933_like10430.00716.6
TkA08G130060PF12831FAD_oxidored10420.4610.4
TkA08G130060PF01266DAO11634.1e-0833.9
TkA08G130060PF00890FAD_binding_211503.6e-0523.9
TkA08G130060PF00070Pyr_redox11470.00219.3
TkA08G130060PF05834Lycopene_cycl11430.1911.5
TkA08G130060PF01134GIDA11370.211.4
TkA08G130060PF02558ApbA11510.3911.0
TkA08G130060PF13738Pyr_redox_312424.5e-0523.6
TkA08G130060PF13450NAD_binding_813418.2e-0523.5
TkA08G130060PF01593Amino_oxidase18410.0513.6
TkA08G130060PF03486HI0933_like1031620.00716.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81815Arabidopsis thalianasp|O81815|MO1_ARATH Monooxygenase 146.100%Swiss-ProtMedium
O81816Arabidopsis thalianasp|O81816|MO2_ARATH Monooxygenase 233.000%Swiss-ProtMedium
Q9FLC2Arabidopsis thalianasp|Q9FLC2|MO3_ARATH Monooxygenase 331.500%Swiss-ProtMedium

JBrowse

View in Genome Browser